View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_209 (Length: 236)

Name: NF10151A_low_209
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_209
NF10151A_low_209
[»] chr2 (1 HSPs)
chr2 (19-221)||(42959789-42960003)
[»] chr8 (1 HSPs)
chr8 (126-212)||(5504741-5504827)
[»] chr5 (2 HSPs)
chr5 (47-95)||(11707094-11707142)
chr5 (119-167)||(35608112-35608160)
[»] chr4 (1 HSPs)
chr4 (66-96)||(35064893-35064923)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 42959789 - 42960003
Alignment:
Q  19 aacacttacatatatgtgtttgaaagggcttatcaaaatatattataacatgtttataaattgttttcagcttatttcgttaaactg------------a 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||            |    
T  42959789 aacacttacatatatgtgtttgaaagggcttatcaaaatatattataacatgtttataaactgttttcagcttatttcgttaaactgttcatgaaacgga 42959888  T
Q  107 gttatcagtaagccctatacatacctgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42959889 gttatcagtaagccctatacatacctgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaa 42959988  T
Q  207 gtctgttaacaccaa 221  Q
    |||||||||||||||    
T  42959989 gtctgttaacaccaa 42960003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 5504827 - 5504741
Alignment:
Q  126 catacctgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgt 212  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||| || ||||| ||||| ||||| ||||| | ||| || |||||||    
T  5504827 cataccttcccatcatcatcacagtggcttgaggatttgttcctggtgattcagtaaacgttgaaccatcgacgactcggagtctgt 5504741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 11707142 - 11707094
Alignment:
Q  47 cttatcaaaatatattataacatgtttataaattgttttcagcttattt 95  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||||    
T  11707142 cttatcaaaatagattatgacatgtttataagttgttttcagcttattt 11707094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 35608160 - 35608112
Alignment:
Q  119 ccctatacatacctgcccatcatcatgacagtagcttgaggatttgttc 167  Q
    |||| ||||| ||||||||||||||||||||||||||||| ||| ||||    
T  35608160 ccctgtacatgcctgcccatcatcatgacagtagcttgagaattggttc 35608112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 96
Target Start/End: Complemental strand, 35064923 - 35064893
Alignment:
Q  66 acatgtttataaattgttttcagcttatttc 96  Q
    |||||||||||||||||||||||||||||||    
T  35064923 acatgtttataaattgttttcagcttatttc 35064893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University