View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_210 (Length: 236)
Name: NF10151A_low_210
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_210 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 29280376 - 29280301
Alignment:
| Q |
161 |
ggttgttcctatactcaatcacaaagaataaaagtaaccaaattagtaccatggtccaagaacttatgttgactca |
236 |
Q |
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| T |
29280376 |
ggttgttcctatactcaatcaaaaagaataaaagtaaacaaattagtaccatggtccaagaacttatgttgactca |
29280301 |
T |
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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 29280533 - 29280492
Alignment:
| Q |
4 |
atgcaaatccacaaaaagcacacatggttctggtggtttagg |
45 |
Q |
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| T |
29280533 |
atgcaaatccacaaaaagtacacatggttctggtggtttagg |
29280492 |
T |
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