View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_213 (Length: 235)
Name: NF10151A_low_213
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_213 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 23171339 - 23171511
Alignment:
| Q |
33 |
caagaaaataagactcaaaagccaacaaaatatggggaatttttgctctggacatgaaaagagaagagatgataaaataaacaagaaaaatggtggattt |
132 |
Q |
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| T |
23171339 |
caagaaaataagactcaaaagccaacaaaatatggggaatttttgctctggacatgaaaagagaagagatgataaaataaacaagaaaaatggtggattt |
23171438 |
T |
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| Q |
133 |
aaagccatgcatggtggtaacatggtttttatgactgatgctaatcatggagggggtcatcatggacatgatg |
205 |
Q |
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| T |
23171439 |
aaagccatgcaaggtggtaacatggtttttatgactgatgctaatcctggagggggtcatcatggacatgatg |
23171511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 23178875 - 23178909
Alignment:
| Q |
164 |
tgactgatgctaatcatggagggggtcatcatgga |
198 |
Q |
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| T |
23178875 |
tgactgatgctaatcctggagggggtcatcatgga |
23178909 |
T |
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