View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_218 (Length: 232)
Name: NF10151A_low_218
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_218 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 11860330 - 11860131
Alignment:
| Q |
20 |
acttcccagcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgggcacttgaaggggtcgaagatcttttcaca |
119 |
Q |
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| T |
11860330 |
acttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttatcaca |
11860231 |
T |
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| Q |
120 |
agttgatgttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacaccaaa |
219 |
Q |
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| T |
11860230 |
agttgatgttgtcacctttacctcgtacggaagccgagggttgttaatgttgtatggcaaaagaaaggtccttagtttctttgctttctgaaacaccaaa |
11860131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 11828195 - 11827999
Alignment:
| Q |
20 |
acttcccagcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgggcacttgaaggggtcgaagatcttttcaca |
119 |
Q |
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| T |
11828195 |
acttcacatcctcaatagagcttggaactgtcttgatccccaagtcatgtagatccaacacgcgtagcgagtacttgaaggtgtcgaagatcttatcaca |
11828096 |
T |
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| Q |
120 |
agttgatgttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacacc |
216 |
Q |
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| T |
11828095 |
agttgacgttgtcatctttacctcgtgcggaagacgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctgtctgaaacacc |
11827999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 11902236 - 11902410
Alignment:
| Q |
29 |
cctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgggcacttgaaggggtcgaagatcttttcacaagttgatgt |
128 |
Q |
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| T |
11902236 |
cctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgtaggg---acttgaaggtgttgaagatcttatcgcatgttgatgt |
11902332 |
T |
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| Q |
129 |
tgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgcttt |
206 |
Q |
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| T |
11902333 |
tgtcatcttcacctcgtgtggaaggcgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttgcttt |
11902410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 12039084 - 12038903
Alignment:
| Q |
31 |
tcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcg--tagcgggcacttgaaggggtcgaagatcttttcacaagttgatgt |
128 |
Q |
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| T |
12039084 |
tcaatagagctcggaatcgtcttgatccccaagtcatgcatatctaacacgcgcatagct-----ttgaaggtgttaaagatcttatcacaggttgatgt |
12038990 |
T |
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| Q |
129 |
tgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacac |
215 |
Q |
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| T |
12038989 |
tgtcatctgtacctcgtcaggaagccgagggttgtcagtgttgtatggcaaaagaatggtcctcagttttttagctttctcaaacac |
12038903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 11731966 - 11731791
Alignment:
| Q |
29 |
cctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgggcacttgaaggggtcgaagatcttttcacaagttgatgt |
128 |
Q |
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||||||||||| | || || ||||||||||||| |||||||||||||||||| | | | ||||||||| || ||||||||| ||||| |||| || |
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| T |
11731966 |
cctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatgg---acttgaaggtgttgaagatcttatcacaggttggcgt |
11731870 |
T |
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| Q |
129 |
tgtcacctttacctcatgcggaagctgagggttgttaatg---ttgtatggcaaaagaatggtccttagtttctttgct |
204 |
Q |
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| T |
11731869 |
cgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgct |
11731791 |
T |
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