View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151A_low_22 (Length: 420)
Name: NF10151A_low_22
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Complemental strand, 4236321 - 4235918
Alignment:
| Q |
11 |
gatgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatatctgtgatggcaaggtcttctcctt |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |
|
|
| T |
4236321 |
gatgaaacagtggttgaaggcgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatctctgtgatggcaagatcttctccat |
4236222 |
T |
|
| Q |
111 |
ttgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaccgatgcaccggcattgaaagaagctga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
4236221 |
ttgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaaccggagacggaacaaacgatgcaccagcattgaaagaagctga |
4236122 |
T |
|
| Q |
211 |
tattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttata |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4236121 |
tattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctattgtaacagttata |
4236022 |
T |
|
| Q |
311 |
aattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggttt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236021 |
aattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggttt |
4235922 |
T |
|
| Q |
411 |
cagc |
414 |
Q |
| |
|
|||| |
|
|
| T |
4235921 |
cagc |
4235918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 30441333 - 30441396
Alignment:
| Q |
194 |
gcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagaga |
257 |
Q |
| |
|
||||||| |||||||| ||||||| |||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
30441333 |
gcattgatagaagctggtattggaatttccatgggaattcaaggtaccgaagttgcaaaagaga |
30441396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 414
Target Start/End: Complemental strand, 6185446 - 6185042
Alignment:
| Q |
10 |
agatgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatatctgtgatggcaaggtcttctcct |
109 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||| || ||||||||||| || | || ||||| ||||||| |||||||||||| || ||||| |
|
|
| T |
6185446 |
agatgaaacggtggttgaaggcgaacaatttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctcca |
6185347 |
T |
|
| Q |
110 |
tttgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaccgatgcaccggcattgaaagaagctg |
209 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
6185346 |
tttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccg |
6185247 |
T |
|
| Q |
210 |
atattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttat |
309 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
6185246 |
atatcggactttcaatgggaattcaaggtactgaagttgcaaaagagagttcagatattgttatattagatgacaattttgcatctatcgtaacagtgtt |
6185147 |
T |
|
| Q |
310 |
aaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtt |
409 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || ||||||||| |
|
|
| T |
6185146 |
aaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcccttgttatcaatttcgttgcggcggtt |
6185047 |
T |
|
| Q |
410 |
tcagc |
414 |
Q |
| |
|
||||| |
|
|
| T |
6185046 |
tcagc |
6185042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 185 - 395
Target Start/End: Complemental strand, 19593030 - 19592829
Alignment:
| Q |
185 |
gatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgaca |
284 |
Q |
| |
|
|||||| | ||| ||||||||||| |||||| |||||| |||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19593030 |
gatgcatcagcactgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttatattagatgaca |
19592931 |
T |
|
| Q |
285 |
attttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcact |
384 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19592930 |
attttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattcaatt---------agtgaatgtggcagcact |
19592840 |
T |
|
| Q |
385 |
tgttataaatt |
395 |
Q |
| |
|
|||||| |||| |
|
|
| T |
19592839 |
tgttatcaatt |
19592829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 116 - 393
Target Start/End: Complemental strand, 38357160 - 38356883
Alignment:
| Q |
116 |
aaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaccgatgcaccggcattgaaagaagctgatattg |
215 |
Q |
| |
|
|||||| | ||||| |||||||||| | | ||||||||||||||||| || || || || || |||| ||||||||| || || |||||||||||||| | |
|
|
| T |
38357160 |
aaacttttgatggtgcaatgcttaagaaagaaaggtcatgtagttgcggtcacaggcgacggcacaaacgatgcacctgccttaaaagaagctgatatag |
38357061 |
T |
|
| Q |
216 |
gactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattg |
315 |
Q |
| |
|
||||||| |||||||| ||||| || ||||| || ||||| ||||| ||||| || || ||||| ||||| || ||| | | ||| ||| ||| || |
|
|
| T |
38357060 |
gactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatatcgtcatcttagacgacaacttcaattctgttgcaactgttttaaggtg |
38356961 |
T |
|
| Q |
316 |
gggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaa |
393 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||||| |||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
38356960 |
gggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgtgataaa |
38356883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University