View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_227 (Length: 230)

Name: NF10151A_low_227
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_227
NF10151A_low_227
[»] chr4 (4 HSPs)
chr4 (44-230)||(10182979-10183165)
chr4 (137-203)||(36471497-36471563)
chr4 (44-109)||(17258417-17258481)
chr4 (44-109)||(16175932-16175997)
[»] chr1 (5 HSPs)
chr1 (48-204)||(49087421-49087576)
chr1 (44-203)||(23928586-23928744)
chr1 (44-198)||(14783906-14784058)
chr1 (150-204)||(49087082-49087136)
chr1 (93-161)||(638035-638103)
[»] chr3 (3 HSPs)
chr3 (47-201)||(4609470-4609625)
chr3 (149-203)||(23647093-23647147)
chr3 (79-165)||(16224774-16224860)
[»] chr8 (2 HSPs)
chr8 (44-203)||(16592300-16592455)
chr8 (57-109)||(17706066-17706118)
[»] chr7 (1 HSPs)
chr7 (47-169)||(37947317-37947439)
[»] chr5 (1 HSPs)
chr5 (44-121)||(22901679-22901756)
[»] scaffold0186 (1 HSPs)
scaffold0186 (47-205)||(16654-16811)
[»] scaffold0097 (1 HSPs)
scaffold0097 (136-205)||(22269-22338)
[»] chr2 (1 HSPs)
chr2 (136-205)||(20718432-20718501)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 10183165 - 10182979
Alignment:
Q  44 agaggggggccaaaccaaaccctcgaaagaaaaggaaaattacgtaaaacgaaaattaggtaaccctgtacggtccctnnnnnnntccccccgaacaaac 143  Q
    |||||||||||||||||||||||| |||||||| |||||||||| |||||| ||||||||||||||| ||||||||||       |||||||||||||||    
T  10183165 agaggggggccaaaccaaaccctcaaaagaaaacgaaaattacggaaaacgcaaattaggtaaccctatacggtccctaaagaaatccccccgaacaaac 10183066  T
Q  144 ttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagcttatccgctcttataagtacaatatgttcg 230  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  10183065 tcgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccgtgactagctagcttatccgctcttacgagtacaatatgttcg 10182979  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 36471563 - 36471497
Alignment:
Q  137 aacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagctta 203  Q
    |||||||| | ||||||||||| |||| |||||||||||| |||||| ||| |||||||||| ||||    
T  36471563 aacaaactcgagcataatgtccgaccatatcgtgtctgtaaccatgtgaccgtgactagctaactta 36471497  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 17258481 - 17258417
Alignment:
Q  44 agaggggggccaaaccaaaccctcgaaagaaaaggaaaattacgtaaaacgaaaattaggtaaccc 109  Q
    |||| ||||||||||||||||||| ||||||||   | |||||| |||||||||||||||||||||    
T  17258481 agagtggggccaaaccaaaccctcaaaagaaaatagagattacg-aaaacgaaaattaggtaaccc 17258417  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 16175932 - 16175997
Alignment:
Q  44 agaggggggccaaaccaaaccctc-gaaagaaaaggaaaattacgtaaaacgaaaattaggtaaccc 109  Q
    ||||||||||||||||||||||||  |||||||| | |||| ||| ||||| |||||||||||||||    
T  16175932 agaggggggccaaaccaaaccctcaaaaagaaaaag-aaataacggaaaacaaaaattaggtaaccc 16175997  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 204
Target Start/End: Complemental strand, 49087576 - 49087421
Alignment:
Q  48 gggggccaaaccaaaccctcgaaagaaaaggaaaattacgtaaaacgaaaattaggtaaccctgtacggtccctnnnnnnntccccccgaacaaacttgg 147  Q
    |||||| |||||||| ||||||||||| | |||||||| | ||||||||||||||||| | | |||||||||||       |||||| ||||||||| ||    
T  49087576 gggggctaaaccaaatcctcgaaagaagacgaaaattagggaaaacgaaaattaggtacctc-gtacggtccctaaagaaatccccctgaacaaactcgg 49087478  T
Q  148 gcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagcttat 204  Q
    |||||||||||||||||||| ||| |||| |||||| ||| ||||||||||| ||||    
T  49087477 gcataatgtcccaccaaatcatgtttgtaaccatgtgaccgtgactagctagtttat 49087421  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 23928744 - 23928586
Alignment:
Q  44 agaggggggccaaaccaaaccctcgaaagaaaaggaaaattacgtaaaacgaaaattaggtaaccctgtacggtccctnnnnnnntccccccgaacaaac 143  Q
    |||| ||| |||||||||||||| || |||||  |||||||||| |||||||||||||||||||||    || |||||       |||||| ||||||||    
T  23928744 agagagggaccaaaccaaacccttgatagaaagcgaaaattacggaaaacgaaaattaggtaaccccagtcgatccctaaagaaatccccc-gaacaaac 23928646  T
Q  144 ttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagctta 203  Q
    | ||||||| |||||||||| || |||| |||| |||||| ||| |||||||||||||||    
T  23928645 tcgggcatattgtcccaccatattgtgtttgtaaccatgtgaccgtgactagctagctta 23928586  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 14784058 - 14783906
Alignment:
Q  44 agaggggggccaaaccaaaccctcgaaagaaaaggaaaattacgtaaaacgaaaattaggtaaccctgtacggtccctnnnnnnntccccccgaacaaac 143  Q
    |||||||||||| ||||||||||||| |||||   ||||||||  ||||| |||||| ||||||||||  | ||||||       ||||||||||||| |    
T  14784058 agaggggggccagaccaaaccctcgatagaaagcaaaaattacaaaaaacaaaaatttggtaaccctgaccagtccctaaagaaatccccccgaacaa-c 14783960  T
Q  144 ttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagcta 198  Q
    | |||| ||||||||||||| ||||||||||||  ||||| ||||||||||||||    
T  14783959 tcgggcgtaatgtcccaccatatcgtgtctgta-acatgtgaccatgactagcta 14783906  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 49087136 - 49087082
Alignment:
Q  150 ataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagcttat 204  Q
    |||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||    
T  49087136 ataatgtcccaccaaatcgtgtttgtaaccatgtgaccgtgactagctagcttat 49087082  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 638103 - 638035
Alignment:
Q  93 cgaaaattaggtaaccctgtacggtccctnnnnnnntccccccgaacaaacttgggcataatgtcccac 161  Q
    |||||||||||||||||  ||||||||||       |||||||||||||||| ||||||||| ||||||    
T  638103 cgaaaattaggtaacccattacggtccctaaagaaatccccccgaacaaactcgggcataatatcccac 638035  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 4609470 - 4609625
Alignment:
Q  47 ggggggccaaaccaaaccctcgaaagaaaaggaaaattacgtaaaacgaaaattaggtaaccctgtacggtccctnnnnnnnt-ccccccgaacaaactt 145  Q
    |||||||  ||||||||||| || |||||   || |||||| ||||| |||||||||||||||||  ||||||||       | |||||||||||||||     
T  4609470 ggggggctgaaccaaaccctagatagaaagtaaatattacgaaaaacaaaaattaggtaaccctgaccggtccctaaagaaatcccccccgaacaaactc 4609569  T
Q  146 gggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagct 201  Q
    |||||||||||||||||| || |||| |||| |||||| ||| |||||||||||||    
T  4609570 gggcataatgtcccaccatattgtgtttgtaaccatgtgaccgtgactagctagct 4609625  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 23647147 - 23647093
Alignment:
Q  149 cataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagctta 203  Q
    ||||||||||||||| || ||||||||| |||||| ||| |||||||||||||||    
T  23647147 cataatgtcccaccatattgtgtctgtaaccatgtgaccgtgactagctagctta 23647093  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 16224774 - 16224860
Alignment:
Q  79 aaaattacgtaaaacgaaaattaggtaaccctgtacggtccctnnnnnnntccccccgaacaaacttgggcataatgtcccaccaaa 165  Q
    ||||||||| |||  ||||||||||||||||   |||||||||       |||||||||||||||| |||| |||| ||||||||||    
T  16224774 aaaattacgaaaagagaaaattaggtaacccatcacggtccctaaagaaatccccccgaacaaactcgggcctaatatcccaccaaa 16224860  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 16592300 - 16592455
Alignment:
Q  44 agaggggggccaaaccaaaccctcgaaagaaaaggaaaattacgtaaaacgaaaattaggtaaccctgtacggtccctnnnnnnntccccc-cgaacaaa 142  Q
    ||||||||||||||||||||||||||||||||  |||||||||| ||||| |||||    ||||||||  |||| |||       ||||||  |||||||    
T  16592300 agaggggggccaaaccaaaccctcgaaagaaagcgaaaattacgaaaaac-aaaat----taaccctgaccggttcctaaagagatcccccttgaacaaa 16592394  T
Q  143 cttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagctta 203  Q
    || || |||||||||||| || || ||||||||| |||||| ||  |||||||||||||||    
T  16592395 ctcggacataatgtcccaacatattgtgtctgtaaccatgtgactgtgactagctagctta 16592455  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 17706118 - 17706066
Alignment:
Q  57 accaaaccctcgaaagaaaaggaaaattacgtaaaacgaaaattaggtaaccc 109  Q
    |||||||||||||||||||   ||||||| | ||||| |||||||||||||||    
T  17706118 accaaaccctcgaaagaaagcaaaaattaaggaaaacaaaaattaggtaaccc 17706066  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 169
Target Start/End: Original strand, 37947317 - 37947439
Alignment:
Q  47 ggggggccaaaccaaaccctcgaaagaaaaggaaaattacgtaaaacgaaaattaggtaaccctgtacggtccctnnnnnnntccccccgaacaaacttg 146  Q
    |||||||| ||||||||||| || |||||  |||||||||| ||||| ||||||||| |||||||  | ||||||       || ||||||||||||| |    
T  37947317 ggggggccgaaccaaacccttgatagaaagtgaaaattacggaaaacaaaaattaggaaaccctgaccagtccctaaagaaatctccccgaacaaactcg 37947416  T
Q  147 ggcataatgtcccaccaaatcgt 169  Q
     |||||||||||||||| |||||    
T  37947417 tgcataatgtcccaccatatcgt 37947439  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 22901756 - 22901679
Alignment:
Q  44 agaggggggccaaaccaaaccctcgaaagaaaaggaaaattacgtaaaacgaaaattaggtaaccctgtacggtccct 121  Q
    |||| ||||||||||||||||||| |||| |||  ||||||||| ||||| ||||||| ||||||| |||||||||||    
T  22901756 agagaggggccaaaccaaaccctcaaaaggaaataaaaattacgaaaaacaaaaattacgtaacccagtacggtccct 22901679  T

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Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 205
Target Start/End: Complemental strand, 16811 - 16654
Alignment:
Q  47 ggggggccaaaccaaaccctcgaaagaaaaggaaaattacgtaaaacgaaaattaggtaaccctgtacggtccctnnnnnnntccccccgaacaaacttg 146  Q
    |||||| ||||| |||||||| ||||||||   |||||||| ||| |||||||||||| ||||    | ||||||       |||||||||||||||| |    
T  16811 gggggggcaaactaaaccctc-aaagaaaacagaaattacggaaatcgaaaattaggtcacccaaatcagtccctaaaaaaatccccccgaacaaactcg 16713  T
Q  147 ggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagcttatc 205  Q
    |||||| ||||||||||||  |||| ||||||| ||| |||||||| ||| || |||||    
T  16712 ggcatagtgtcccaccaaactgtgtatgtagccctgtgaccatgacaagcaagtttatc 16654  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 22269 - 22338
Alignment:
Q  136 gaacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagcttatc 205  Q
    ||||||||| ||||| |||||||||||||| |||||||| | || ||| || ||||||||| || |||||    
T  22269 gaacaaactcgggcacaatgtcccaccaaaccgtgtctgcaaccgtgtgactatgactagcaagtttatc 22338  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 20718432 - 20718501
Alignment:
Q  136 gaacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagcttatc 205  Q
    ||||||||| ||||| |||||||||||||| |||||||| | || ||| || ||||||||| || |||||    
T  20718432 gaacaaactcgggcacaatgtcccaccaaaccgtgtctgcaaccgtgtgactatgactagcaagtttatc 20718501  T

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