View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151A_low_230 (Length: 230)
Name: NF10151A_low_230
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_230 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 12438523 - 12438746
Alignment:
| Q |
1 |
gggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttcatcaacatatcccttgcttccaacaacatgcctaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12438523 |
gggtgcaatcttaaggtttctttaatcactgcttttaaatattttagttcttgaagatttatttcatcaacatatcccttgcttccaacaacatgcctaa |
12438622 |
T |
|
| Q |
101 |
cttctgcttgagccttttttaatactcttggatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12438623 |
cttctgcttgagccttttttaatactcttggatttttcaacatttctgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatat |
12438722 |
T |
|
| Q |
201 |
atcctgcatatcaagtgtacattc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
12438723 |
atcctgcatatcaagtgtacattc |
12438746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 2433463 - 2433258
Alignment:
| Q |
1 |
gggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttcatcaacatatcccttgcttccaacaacatgcctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||| |||||||||| ||| |||||||||| |||||| ||| |||||| || || |||| |
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| T |
2433463 |
gggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaaaatttatttcatcaatatatcctttgtttccaaagacttgtctaa |
2433364 |
T |
|
| Q |
101 |
cttctgcttgagccttttttaatactcttggatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatat |
200 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||| |||||| ||||| |||||||||||||||| || || ||| ||||||||||||||| || |
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|
| T |
2433363 |
cttctgcttgagccttttttagcactctagggtttttcatcatttctgaaaaagcccattctaaagttgaagatgttgtttcacttccagcaaaaatgat |
2433264 |
T |
|
| Q |
201 |
atcctg |
206 |
Q |
| |
|
|||||| |
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|
| T |
2433263 |
atcctg |
2433258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 41620995 - 41621199
Alignment:
| Q |
4 |
tgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttcatcaacatatcccttgcttccaacaacatgcctaactt |
103 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||| | |||| ||||||| ||||| |||||||||||||||| |||| ||| | |||| ||||||| |
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|
| T |
41620995 |
tgcagtctgaaggtttctttaataactgcttttagaaatttcagttcttcaagatctttttcatcaacatatcctctgctaacaaaagcatgtctaactt |
41621094 |
T |
|
| Q |
104 |
ctgcttgagccttttttaatactcttggatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatatatc |
203 |
Q |
| |
|
|| |||||||| |||| |||| ||| || ||||||| |||||| || ||||||||||| | |||||||| ||||| | |||||||| ||| || ||||| |
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|
| T |
41621095 |
cttcttgagcccttttcaatattctagggtttttcagcatttctgagaaggcccattccatagttgtagttgatggctcacttccaccaataataatatc |
41621194 |
T |
|
| Q |
204 |
ctgca |
208 |
Q |
| |
|
||||| |
|
|
| T |
41621195 |
ctgca |
41621199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 41646996 - 41646837
Alignment:
| Q |
1 |
gggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttcatcaacatatcccttgcttccaacaacatgcctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| | |||| |||| |||||||| |||||||||||||||| |||| |||| | | || |||| |
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|
| T |
41646996 |
gggtgcaatcttaaggtttctttaataactgcttttagaaatttcagtttttgaagatctttttcatcaacatatcctctgctaccaaaagcttgtctaa |
41646897 |
T |
|
| Q |
101 |
cttctgcttgagccttttttaatactcttggatttttcaacatttccgaaaaggcccatt |
160 |
Q |
| |
|
||||| ||||||||||||| | |||||| || ||||||| |||||| || || ||||||| |
|
|
| T |
41646896 |
cttcttcttgagcctttttcattactctagggtttttcagcatttctgagaaagcccatt |
41646837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 41654528 - 41654343
Alignment:
| Q |
4 |
tgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttcatcaacatatcccttgcttccaacaacatgcctaactt |
103 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||| |||||| ||||||||||||| |||||||||||||||| |||| |||| | | || ||||||| |
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|
| T |
41654528 |
tgcactcttaatgtttctttaataactgcttttagatatttcagttcttgaagatctttttcatcaacatatcctctgctaccaaaagcttgtctaactt |
41654429 |
T |
|
| Q |
104 |
ctgcttgagccttttttaatactcttggatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttcca |
189 |
Q |
| |
|
|| ||||||||||||| | |||||| || ||||||| |||||| || || ||||||| || |||| | ||||||| |||||||| |
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|
| T |
41654428 |
cttcttgagcctttttcattactctagggtttttcagcatttctgagaaagcccattgtatagttaaggatgatgtctcacttcca |
41654343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 5022259 - 5022468
Alignment:
| Q |
3 |
gtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttcatcaacatatcccttgcttccaacaacatgcctaact |
102 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| | |||| | ||||||||||| || ||||||||||||||| | | | || ||| || |||||| |
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| T |
5022259 |
gtgcattcttaaggtttctttaatcacttcttttagaaatttcaattcttgaagatccacttcatcaacatatcctgttccactaaaaacctgtctaact |
5022358 |
T |
|
| Q |
103 |
tctgcttgagccttttttaatactcttggatttttcaacatttccga-aaag---gcccattctaaagttgtagctgatgtcccacttccagcaaaaaat |
198 |
Q |
| |
|
||| |||||||| | | | ||||||||| ||| ||| || ||| || |||| |||||||| |||||||||| ||||||| |||||||| ||| || |
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|
| T |
5022359 |
tcttcttgagccctaatcagtactcttgggtttctcagcaattctgagaaagcccgcccattccaaagttgtagatgatgtctcacttccaccaataagc |
5022458 |
T |
|
| Q |
199 |
atatcctgca |
208 |
Q |
| |
|
|||||||||| |
|
|
| T |
5022459 |
atatcctgca |
5022468 |
T |
|
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