View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_246 (Length: 228)
Name: NF10151A_low_246
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_246 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 3592184 - 3592415
Alignment:
| Q |
1 |
gatttaaaacttaagtccacaatataaactggtttaaaagaaaaactaatagggaatgctaagaataccctgtgcagtgtacaatgaagtcagcaataac |
100 |
Q |
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| T |
3592184 |
gatttaaaacttaagtccacaatatgaactggtttaaaagaaaaactaatagggaatgctaagaataccctgtgcaatgtacaatgaagtcagcgataac |
3592283 |
T |
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| Q |
101 |
tgcatttccatctttaaaaaccactgcaccatcttcatgaacactgtcaatctgcattgttcaagatcaagaagat----caaacaatctaagcaacagt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3592284 |
tgcatttccatctttaaaaaccactgcaccatcttcatgaacactgtcaatctgcattgttcaagatcaagaagatcgaccaaacaatctaagcaacagt |
3592383 |
T |
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| Q |
197 |
tatccaaaagtttatggatactaatgtcatga |
228 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3592384 |
tatccaaaagtttatggatactaatgtcatga |
3592415 |
T |
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