View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_25 (Length: 417)
Name: NF10151A_low_25
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 53037853 - 53037444
Alignment:
| Q |
1 |
ataacgaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaattggcaat |
100 |
Q |
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| T |
53037853 |
ataactaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaattggcaat |
53037754 |
T |
|
| Q |
101 |
gtcaaccaactaaccactcctaaacttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtcaaatcct |
200 |
Q |
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| T |
53037753 |
gtcaaccaactaaccactcctaaatttggattcccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtcaaatcct |
53037654 |
T |
|
| Q |
201 |
cttgcttcttaaaatactcaattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcataccctaaaggcttaga |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53037653 |
cttgcttcttaaaatactcgattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcataccctaaaggcttaga |
53037554 |
T |
|
| Q |
301 |
tattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcctccaatcaaca |
400 |
Q |
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| T |
53037553 |
tattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcctccaatcaaca |
53037454 |
T |
|
| Q |
401 |
caaacaccaa |
410 |
Q |
| |
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|||||||||| |
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| T |
53037453 |
caaacaccaa |
53037444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 7 - 410
Target Start/End: Original strand, 39995745 - 39996148
Alignment:
| Q |
7 |
aggaagaagcaaagaatctccatc---tgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaattggcaatgtc |
103 |
Q |
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|||||||||||| ||||||||||| | |||||||||||| ||||||||||||| || || ||||| |||||||||||||||||||||||||||| | |
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| T |
39995745 |
aggaagaagcaatgaatctccatcaagttcttcatgtgttcctagccccatataaacctcctttccccacccaaaatcaagtccataaattggcaatgac |
39995844 |
T |
|
| Q |
104 |
aaccaactaaccactcctaaacttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtcaaatcctctt |
203 |
Q |
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||||||||| |||||||||| | ||||| | |||||| ||||| || ||| || |||| | | | ||||||||||| |||||||||||||| |||| |
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| T |
39995845 |
aaccaactagtcactcctaaattaggattccaataaaaaggccccttctcaccattccctac---aacttgaagatcttggaacttagtcaaatcttctt |
39995941 |
T |
|
| Q |
204 |
gcttcttaaaatactcaattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcataccctaaaggcttagatat |
303 |
Q |
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|||||||||| |||||| | |||| || | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| || |
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| T |
39995942 |
gcttcttaaagtactcattccccaacctaatatactcatcgttcactttctcaaccgcttcccttatcctacttgaagcataccctaagggtttagacat |
39996041 |
T |
|
| Q |
304 |
taaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcctccaatcaacacaa |
403 |
Q |
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|||||| ||||| ||||||||||||| |||||| ||| | ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |
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| T |
39996042 |
taaatcacctgctagactagtagccaaaacatctaaaatggcattcccaaaataccctttaggtaaattaggttccacacgacgcctccaatcaacacaa |
39996141 |
T |
|
| Q |
404 |
acaccaa |
410 |
Q |
| |
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||||||| |
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|
| T |
39996142 |
acaccaa |
39996148 |
T |
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