View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_251 (Length: 226)
Name: NF10151A_low_251
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_251 |
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| [»] chr2 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 14282979 - 14282754
Alignment:
| Q |
1 |
gaaaaaatgtcagaactttttcaaaacaattggccaaaaccagaggaaaaaagtaagcatccagttggagttaccctttttaggtgtttttggaaacaca |
100 |
Q |
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| T |
14282979 |
gaaaaaatgtcagaactttttcaaaacaattggccaaaaccagaggaaaatagtaagcatccagttggagttaccctttttaggtgtttttggaaacaca |
14282880 |
T |
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| Q |
101 |
tagcttttacgggcttccttgcaatcattaagctttgtgttatgtatgttggtcccttgttgattgagagttttgttgatttcacatcaaggaaagatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282879 |
tagcttttacgggcttccttgcaatcattaagctttgtgttatgtatgttggtcccttgttgattgagagttttgttgatttcacatcaaggaaagatgg |
14282780 |
T |
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| Q |
201 |
tacgagtagtgaaggtattgttttga |
226 |
Q |
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| T |
14282779 |
tacgagtagtgaaggtattgttttga |
14282754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 14321128 - 14320903
Alignment:
| Q |
1 |
gaaaaaatgtcagaactttttcaaaacaattggccaaaaccagaggaaaaaagtaagcatccagttggagttaccctttttaggtgtttttggaaacaca |
100 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14321128 |
gaaaaaatgtctgaactttttcaaagcaattggccaaaaccagaggaaaacagtaagcatccagttggagttaccctttttaggtgtttttggaaacaaa |
14321029 |
T |
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| Q |
101 |
tagcttttacgggcttccttgcaatcattaagctttgtgttatgtatgttggtcccttgttgattgagagttttgttgatttcacatcaaggaaagatgg |
200 |
Q |
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| T |
14321028 |
tagctttcacgggcttcattgcagtcattaggctttgtgttatgtatgttggtcccttgttgattcaaagttttgttgatttcacatcaaggaaagatag |
14320929 |
T |
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| Q |
201 |
tacgagtagtgaaggtattgttttga |
226 |
Q |
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| T |
14320928 |
tacgactagtgaaggtattgttttga |
14320903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 14304737 - 14304512
Alignment:
| Q |
1 |
gaaaaaatgtcagaactttttcaaaacaattggccaaaaccagaggaaaaaagtaagcatccagttggagttaccctttttaggtgtttttggaaacaca |
100 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304737 |
gaaaaaatgtctgaactttttcaaaacaattggccgaaaccagaggaaaacagtaagcatccagttggagttaccctttttaggtgtttttggaaacaca |
14304638 |
T |
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| Q |
101 |
tagcttttacgggcttccttgcaatcattaagctttgtgttatgtatgttggtcccttgttgattgagagttttgttgatttcacatcaaggaaagatgg |
200 |
Q |
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||| ||| || ||||| |||||| |||| | |||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||| ||||||| | |
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| T |
14304637 |
tagttttcactggctttcttgcattcatgaggctttgtgttatgtatgtcggtccattgctgattcagagttttgttgatttcacatcacagaaagatag |
14304538 |
T |
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| Q |
201 |
tacgagtagtgaaggtattgttttga |
226 |
Q |
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| T |
14304537 |
tccgactagtgaaggtattgttttga |
14304512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 25885810 - 25885585
Alignment:
| Q |
1 |
gaaaaaatgtcagaactttttcaaaacaattggccaaaaccagaggaaaaaagtaagcatccagttggagttaccctttttaggtgtttttggaaacaca |
100 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| ||| || | |||||||||||||||||||||| |
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| T |
25885810 |
gaaaaaatgtcagaaaattttataaacaattggccaaaaccagaggaaaatagtaagcatccagttatagtagccttatttaggtgtttttggaaacaca |
25885711 |
T |
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| Q |
101 |
tagcttttacgggcttccttgcaatcattaagctttgtgttatgtatgttggtcccttgttgattgagagttttgttgatttcacatcaaggaaagatgg |
200 |
Q |
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||||||| || |||||||||||||| |||| |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| | |
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| T |
25885710 |
tagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttgatttcacatcaaggaaagatag |
25885611 |
T |
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| Q |
201 |
tacgagtagtgaaggtattgttttga |
226 |
Q |
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| T |
25885610 |
tactactagtgaaggtattattttga |
25885585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 44349654 - 44349429
Alignment:
| Q |
1 |
gaaaaaatgtcagaactttttcaaaacaattggccaaaaccagaggaaaaaagtaagcatccagttggagttaccctttttaggtgtttttggaaacaca |
100 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| || || | |||||||||||||||||||||| |
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| T |
44349654 |
gaaaaaatgtcagaaaattttataaacaattggccaaaaccagaggaaaacagtaagcatccagttatggtagccttatttaggtgtttttggaaacaca |
44349555 |
T |
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| Q |
101 |
tagcttttacgggcttccttgcaatcattaagctttgtgttatgtatgttggtcccttgttgattgagagttttgttgatttcacatcaaggaaagatgg |
200 |
Q |
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||||| | || |||||||||||| | |||| |||||||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||| | |
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| T |
44349554 |
tagctatcactggcttccttgcagtgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttgattttacatcaaggaaagatag |
44349455 |
T |
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| Q |
201 |
tacgagtagtgaaggtattgttttga |
226 |
Q |
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||| | |||||||| |||| |||||| |
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| T |
44349454 |
tactactagtgaagatattattttga |
44349429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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