View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_255 (Length: 224)

Name: NF10151A_low_255
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_255
NF10151A_low_255
[»] chr7 (2 HSPs)
chr7 (5-162)||(8694745-8694902)
chr7 (161-224)||(8694656-8694719)
[»] chr3 (37 HSPs)
chr3 (14-139)||(11408698-11408823)
chr3 (14-139)||(27998494-27998619)
chr3 (5-157)||(28513401-28513553)
chr3 (19-133)||(28472403-28472517)
chr3 (19-133)||(28492444-28492558)
chr3 (14-149)||(27464435-27464570)
chr3 (14-133)||(28079308-28079427)
chr3 (14-133)||(28129854-28129973)
chr3 (14-133)||(28177940-28178059)
chr3 (5-123)||(28143773-28143891)
chr3 (5-90)||(27962763-27962848)
chr3 (5-122)||(27909693-27909810)
chr3 (14-162)||(17749388-17749536)
chr3 (14-162)||(19050708-19050856)
chr3 (24-161)||(26117292-26117429)
chr3 (24-161)||(26145296-26145433)
chr3 (161-221)||(28079482-28079542)
chr3 (164-221)||(27909879-27909936)
chr3 (24-161)||(26239556-26239693)
chr3 (164-221)||(28492329-28492386)
chr3 (164-221)||(28513310-28513367)
chr3 (172-224)||(28130039-28130091)
chr3 (161-221)||(28178105-28178165)
chr3 (24-91)||(18081351-18081418)
chr3 (28-83)||(28047349-28047404)
chr3 (21-91)||(26624394-26624464)
chr3 (175-221)||(28047509-28047555)
chr3 (164-221)||(11408875-11408932)
chr3 (172-221)||(27998667-27998716)
chr3 (164-221)||(28472288-28472345)
chr3 (173-221)||(28143968-28144016)
chr3 (31-133)||(26183764-26183866)
chr3 (24-86)||(27343891-27343953)
chr3 (24-90)||(27370189-27370255)
chr3 (24-81)||(18723481-18723538)
chr3 (25-91)||(18031534-18031600)
chr3 (31-133)||(26212371-26212473)
[»] chr4 (4 HSPs)
chr4 (14-157)||(9330325-9330468)
chr4 (14-157)||(9384108-9384251)
chr4 (175-221)||(9330234-9330280)
chr4 (175-221)||(9384017-9384063)
[»] chr5 (2 HSPs)
chr5 (19-157)||(26027270-26027408)
chr5 (175-218)||(26027182-26027225)
[»] scaffold0067 (1 HSPs)
scaffold0067 (5-113)||(23851-23959)
[»] scaffold1344 (1 HSPs)
scaffold1344 (24-86)||(578-640)
[»] scaffold0854 (1 HSPs)
scaffold0854 (24-81)||(4533-4590)
[»] scaffold0043 (1 HSPs)
scaffold0043 (24-81)||(73305-73362)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 8694902 - 8694745
Alignment:
Q  5 gactgagatgaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcat 104  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8694902 gactaagaagaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcatttaagatgcat 8694803  T
Q  105 ttcacaactacaatgcctcgtagacactacgcatattgattctcatgtatcaattgtc 162  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  8694802 ttcacaactacaatgcctcttagacactaagcatattgattctcatgtatcaattgtc 8694745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 8694719 - 8694656
Alignment:
Q  161 tcaaaggaatggataatttggaagcattgtgcaatgatcctctttcctttgactctctgaaaag 224  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  8694719 tcaaaggaatggataatttggaagaattgtgcaatggtcctctttcctttgactctctgaaaag 8694656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 11408698 - 11408823
Alignment:
Q  14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||||| ||||| ||||||||||||||||||||| || |||||| | ||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  11408698 gaatcgtgggggaatggagaaatatcatacctgaaatggttcctttagatcaaggtatgaatgatctagttgagcttcatttaagatgcatttcacaact 11408797  T
Q  114 acaatgcctcgtagacactacgcata 139  Q
    | |||||||| | ||||||| |||||    
T  11408798 aaaatgcctcattgacactatgcata 11408823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 27998494 - 27998619
Alignment:
Q  14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||| ||||||||| ||||||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||  ||| |||| |||||||||| |    
T  27998494 gaatggaggggggagggagaaatatcatacctgagatgattcctatgggtcatggtatgaatgatctagttgagcttgatttgagatccatttcacaatt 27998593  T
Q  114 acaatgcctcgtagacactacgcata 139  Q
    |||||||||| | ||||||| |||||    
T  27998594 acaatgcctcattgacactaagcata 27998619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 28513553 - 28513401
Alignment:
Q  5 gactgagatgaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcat 104  Q
    |||| ||| |||| |||||||||||||||||||| || ||||| ||||||||||| |||  |||||||||||||||||| ||||||  ||| ||||||||    
T  28513553 gactaagaagaatggaggggggatggagaaatatgattcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcat 28513454  T
Q  105 ttcacaactacaatgcctcgtagacactacgcatattgattctcatgtatcaa 157  Q
    ||||||||||||||||||| | ||||| |  ||||| || ||||| |||||||    
T  28513453 ttcacaactacaatgcctcattgacaccaaacatatcgaatctcaagtatcaa 28513401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 28472517 - 28472403
Alignment:
Q  19 gaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaat 118  Q
    |||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||| |||||| |||| ||  | ||||||||||||||||    
T  28472517 gaggggggatggagaaatatgatgcctgagattgttcctatggaccatggtatgaatgatctagtcgagcttagtttgagtagtatttcacaactacaat 28472418  T
Q  119 gcctcgtagacacta 133  Q
    ||||| | |||||||    
T  28472417 gcctcattgacacta 28472403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 28492558 - 28492444
Alignment:
Q  19 gaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaat 118  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||  ||||| |||| ||  | ||||||||||||||||    
T  28492558 gaggggggatggagaaatatgatgcctgagattgttcctatggatcatggtatgaatgatctagtcaagcttagtttgagtagtatttcacaactacaat 28492459  T
Q  119 gcctcgtagacacta 133  Q
    ||||| | |||||||    
T  28492458 gcctcattgacacta 28492444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 27464570 - 27464435
Alignment:
Q  14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  ||| | || |||||||||  |    
T  27464570 gaatggaggggggatggagaaacatcatacctgagattgttcctatggatcatggtatgaatgatctagtcgagcttaatttgatatccatttcacagtt 27464471  T
Q  114 acaatgcctcgtagacactacgcatattgattctca 149  Q
     || |||||| | ||||||  ||||| |||||||||    
T  27464470 gcactgcctcattgacactcagcatactgattctca 27464435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 28079308 - 28079427
Alignment:
Q  14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    ||||||| ||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||   || |||| |||||||||| |    
T  28079308 gaatcgaaggggggtggagaaatatcatacctgatattgttccaatggatcatggtatgaatgatctagttgagcttgaattgagatccatttcacaatt 28079407  T
Q  114 acaatgcctcgtagacacta 133  Q
    ||| |||||| | |||||||    
T  28079408 acagtgcctcattgacacta 28079427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 28129854 - 28129973
Alignment:
Q  14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||||||||||| ||||| ||| |||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||  ||| |||||||||| |    
T  28129854 gaatcgagggggaatggaaaaacatcatacctgagattgttcccatggatcaaggtatgaatgatatagttgagcttcgtttgggatccatttcacaatt 28129953  T
Q  114 acaatgcctcgtagacacta 133  Q
    ||| |||||| | |||||||    
T  28129954 acagtgcctcattgacacta 28129973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 28177940 - 28178059
Alignment:
Q  14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||| | ||||||||||||||||||||| | |||||| |||| |||| |||||||||| |    
T  28177940 gaatcgagggggggtggagaaacatcgtacctgagattgttcctctggatcatggtatgaatgatctaatcgagcttggtttgagatccatttcacaatt 28178039  T
Q  114 acaatgcctcgtagacacta 133  Q
    ||| |||||| | |||||||    
T  28178040 acagtgcctcattgacacta 28178059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 28143773 - 28143891
Alignment:
Q  5 gactgagatgaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcat 104  Q
    |||| ||| |||||||||||| ||||| ||| |||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||  ||| |||    
T  28143773 gactaagaagaatcgagggggaatggaaaaacatcatacctgagattgttcccatggatcaaggtatgaatgatatagttgagcttcgtttgggatccat 28143872  T
Q  105 ttcacaactacaatgcctc 123  Q
    ||||||| |||| ||||||    
T  28143873 ttcacaattacagtgcctc 28143891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 27962763 - 27962848
Alignment:
Q  5 gactgagatgaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagctt 90  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||    
T  27962763 gactaagaagaatggaggggggatggagaaatatcatacctgagattgttcctatggagcatggtatgaatgatctagtcgagctt 27962848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 27909693 - 27909810
Alignment:
Q  5 gactgagatgaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcat 104  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||  ||||| |  | |||||||||||||||||||||||||||   || |||| |||    
T  27909693 gactaagaagaatcgaggggggatggagaaatatcatacctgagatgattcctttgaaacatggtatgaatgatctagttgagcttgaattgagatccat 27909792  T
Q  105 ttcacaactacaatgcct 122  Q
    ||||||| |||| |||||    
T  27909793 ttcacaattacagtgcct 27909810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 17749536 - 17749388
Alignment:
Q  14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||  |  |||| |||||||||||| ||||||||||||  |||  ||  |||||||||||    
T  17749536 gaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatttcacaact 17749437  T
Q  114 acaatgcctcgtagacactacgcatattgattctcatgtatcaattgtc 162  Q
     |  |||||| | ||||||| |||||||| |||||| ||| ||| ||||    
T  17749436 gcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtc 17749388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 19050856 - 19050708
Alignment:
Q  14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||  |  |||| |||||||||||| ||||||||||||  |||  ||  |||||||||||    
T  19050856 gaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatttcacaact 19050757  T
Q  114 acaatgcctcgtagacactacgcatattgattctcatgtatcaattgtc 162  Q
     |  |||||| | ||||||| |||||||| |||||| ||| ||| ||||    
T  19050756 gcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtc 19050708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 26117429 - 26117292
Alignment:
Q  24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 123  Q
    |||||||| |||| |||| || |||||||||||||| ||| | ||||||||||||||| |||||||| ||||  ||   |||||||||||||| |||||     
T  26117429 gggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattgagctttgtttgggagaaatttcacaactacagtgcctt 26117330  T
Q  124 gtagacactacgcatattgattctcatgtatcaattgt 161  Q
    ||||||||||  |||||| ||||||| ||| |||||||    
T  26117329 gtagacactaaacatattaattctcaagtaccaattgt 26117292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 26145433 - 26145296
Alignment:
Q  24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 123  Q
    |||||| |||||| |||| || ||||| |||||||| ||||| ||||||||||||||| ||||||||| | | |||   |||||||||||||| |||||     
T  26145433 gggatgtagaaatctcatgcccgagatggttcctatagatcaaggtatgaatgatctaattgagcttcatctgagagaaatttcacaactacagtgccta 26145334  T
Q  124 gtagacactacgcatattgattctcatgtatcaattgt 161  Q
    ||||||||||  |||||| ||||||| ||| |||||||    
T  26145333 gtagacactaaacatattaattctcaagtaccaattgt 26145296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 28079482 - 28079542
Alignment:
Q  161 tcaaaggaatggataatttggaagcattgtgcaatgatcctctttcctttgactctctgaa 221  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  28079482 tcaaaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaa 28079542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 27909879 - 27909936
Alignment:
Q  164 aaggaatggataatttggaagcattgtgcaatgatcctctttcctttgactctctgaa 221  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  27909879 aaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaa 27909936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 26239693 - 26239556
Alignment:
Q  24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 123  Q
    |||||||| |||| |||| || |||||||||||||| ||| | ||||||||||||||| || |||||| | | | |   |||||||||||||| | |||     
T  26239693 gggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattaagcttcatctgaaagaaatttcacaactacagtacctt 26239594  T
Q  124 gtagacactacgcatattgattctcatgtatcaattgt 161  Q
    ||||||||||  |||||| ||||||| ||| |||||||    
T  26239593 gtagacactaaacatattaattctcaagtaccaattgt 26239556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 28492386 - 28492329
Alignment:
Q  164 aaggaatggataatttggaagcattgtgcaatgatcctctttcctttgactctctgaa 221  Q
    ||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||    
T  28492386 aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaa 28492329  T

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Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 28513367 - 28513310
Alignment:
Q  164 aaggaatggataatttggaagcattgtgcaatgatcctctttcctttgactctctgaa 221  Q
    ||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||    
T  28513367 aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaa 28513310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 28130039 - 28130091
Alignment:
Q  172 gataatttggaagcattgtgcaatgatcctctttcctttgactctctgaaaag 224  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||    
T  28130039 gataatttggaagaattgttcaatggtcctctttcctttgactctctgaaaag 28130091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 28178105 - 28178165
Alignment:
Q  161 tcaaaggaatggataatttggaagcattgtgcaatgatcctctttcctttgactctctgaa 221  Q
    ||||||||||||||||||| |||| ||||| ||||| |||| |||||||||||||||||||    
T  28178105 tcaaaggaatggataatttagaagaattgttcaatggtcctgtttcctttgactctctgaa 28178165  T

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Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 18081418 - 18081351
Alignment:
Q  24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttc 91  Q
    ||||||||||||| |||| || || ||||||||||| ||||| ||||||||||||||| |||||||||    
T  18081418 gggatggagaaatctcatgccagaaattgttcctatagatcaaggtatgaatgatctaattgagcttc 18081351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 28047349 - 28047404
Alignment:
Q  28 tggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagt 83  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||    
T  28047349 tggagaaatatcatacctgatattgttcctttggatcatggtatgaataatctagt 28047404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 26624394 - 26624464
Alignment:
Q  21 ggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttc 91  Q
    |||||||||||||||| |||| ||||||||||||||||| || |  |||||||||||| | ||||||||||    
T  26624394 ggggggatggagaaatctcatgcctgagattgttcctatagaactaggtatgaatgatattgttgagcttc 26624464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 28047509 - 28047555
Alignment:
Q  175 aatttggaagcattgtgcaatgatcctctttcctttgactctctgaa 221  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||    
T  28047509 aatttggaagaattgtgcaatggtcctctttcctttgactctctgaa 28047555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 11408875 - 11408932
Alignment:
Q  164 aaggaatggataatttggaagcattgtgcaatgatcctctttcctttgactctctgaa 221  Q
    ||||||||||||||||||||| ||||| |||||   ||||||||||||||||||||||    
T  11408875 aaggaatggataatttggaagaattgttcaatggctctctttcctttgactctctgaa 11408932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 27998667 - 27998716
Alignment:
Q  172 gataatttggaagcattgtgcaatgatcctctttcctttgactctctgaa 221  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  27998667 gataatttggaagaattatgcaatggtcctctttcctttgactctctgaa 27998716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 28472345 - 28472288
Alignment:
Q  164 aaggaatggataatttggaagcattgtgcaatgatcctctttcctttgactctctgaa 221  Q
    ||||||||||||||||||||| ||||| ||  | ||||||||||||||||||||||||    
T  28472345 aaggaatggataatttggaagaattgttcagcggtcctctttcctttgactctctgaa 28472288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 28143968 - 28144016
Alignment:
Q  173 ataatttggaagcattgtgcaatgatcctctttcctttgactctctgaa 221  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  28143968 ataatttggaagaattgttcaatggtcctctttcctttgactctctgaa 28144016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 26183866 - 26183764
Alignment:
Q  31 agaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagaca 130  Q
    |||||| |||| || ||||| |||||||| || || ||||||||||||||| ||||||||| |||   | | | |||||||||||| ||||| |||||||    
T  26183866 agaaatctcatgccagagatggttcctatagaacaaggtatgaatgatctaattgagcttcatttggaaggtagttcacaactacagtgccttgtagaca 26183767  T
Q  131 cta 133  Q
    |||    
T  26183766 cta 26183764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 27343891 - 27343953
Alignment:
Q  24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttga 86  Q
    ||||||||||||| |||| |||| |||| ||||||| ||| ||||||||||||||||| ||||    
T  27343891 gggatggagaaatctcatgcctgggattcttcctatggataatggtatgaatgatctaattga 27343953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 27370189 - 27370255
Alignment:
Q  24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagctt 90  Q
    ||||||||||||| |||| |||| |||| ||||||| ||| ||||||||||| ||||| ||||||||    
T  27370189 gggatggagaaatctcatgcctgggattcttcctatagataatggtatgaataatctaattgagctt 27370255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 18723538 - 18723481
Alignment:
Q  24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta 81  Q
    ||||||||||||| |||| |||| ||||||| |||| ||| |||||||||||||||||    
T  18723538 gggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatcta 18723481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 18031600 - 18031534
Alignment:
Q  25 ggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttc 91  Q
    |||||||||||| |||| || ||||| |||||||| ||  ||||||||||||||||  |||||||||    
T  18031600 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttc 18031534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 26212473 - 26212371
Alignment:
Q  31 agaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagaca 130  Q
    |||||| |||| || ||||| ||||||||  | || ||||||||||||||| ||||||||| |||   | | | |||||||||||| ||||| |||||||    
T  26212473 agaaatctcatgccagagatggttcctataaaacaaggtatgaatgatctaattgagcttcatttggaaggtagttcacaactacagtgccttgtagaca 26212374  T
Q  131 cta 133  Q
    |||    
T  26212373 cta 26212371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 9330468 - 9330325
Alignment:
Q  14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||||||| |||  |||||||| ||||||||||||||||||||| | ||||| |||||||||||||| | |||||||| ||| |||||||||| ||||||    
T  9330468 gaatcgagagggtgtggagaaacatcatacctgagattgttcctttggatcaaggtatgaatgatctggctgagcttcatttgagatgcattttacaact 9330369  T
Q  114 acaatgcctcgtagacactacgcatattgattctcatgtatcaa 157  Q
    | |||||||| | ||||||||||||| ||| ||||| |||||||    
T  9330368 aaaatgcctcattgacactacgcatactgaatctcaagtatcaa 9330325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 9384251 - 9384108
Alignment:
Q  14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||||||| |||  |||||||| ||||||||||||||||||||| | ||||| |||||||||||||| | |||||||| ||| |||||||||| ||||||    
T  9384251 gaatcgagagggtgtggagaaacatcatacctgagattgttcctttggatcaaggtatgaatgatctggctgagcttcatttgagatgcattttacaact 9384152  T
Q  114 acaatgcctcgtagacactacgcatattgattctcatgtatcaa 157  Q
    | |||||||| | ||||||||||||| ||| ||||| |||||||    
T  9384151 aaaatgcctcattgacactacgcatactgaatctcaagtatcaa 9384108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 9330280 - 9330234
Alignment:
Q  175 aatttggaagcattgtgcaatgatcctctttcctttgactctctgaa 221  Q
    |||||||||| ||||| ||||| ||||||||||||||||||| ||||    
T  9330280 aatttggaagaattgttcaatggtcctctttcctttgactctttgaa 9330234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 9384063 - 9384017
Alignment:
Q  175 aatttggaagcattgtgcaatgatcctctttcctttgactctctgaa 221  Q
    |||||||||| ||||| ||||| ||||||||||||||||||| ||||    
T  9384063 aatttggaagaattgttcaatggtcctctttcctttgactctttgaa 9384017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 26027408 - 26027270
Alignment:
Q  19 gaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaat 118  Q
    ||||| || |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||  ||| |||| |||||||||| |||| |    
T  26027408 gagggagggtggagaaatatcatgcctgagattgttcatatggatcatggtatgaatgatctagtcgagctttctttgagatccatttcacaattacagt 26027309  T
Q  119 gcctcgtagacactacgcatattgattctcatgtatcaa 157  Q
     |||| |  |||||| || || ||| ||||| |||||||    
T  26027308 acctcattaacactaagcctactgaatctcaagtatcaa 26027270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 26027225 - 26027182
Alignment:
Q  175 aatttggaagcattgtgcaatgatcctctttcctttgactctct 218  Q
    |||||||||| ||||| ||||| |||||||||||||||||||||    
T  26027225 aatttggaagaattgttcaatggtcctctttcctttgactctct 26027182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 23851 - 23959
Alignment:
Q  5 gactgagatgaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcat 104  Q
    |||| ||| ||||||||  ||||||||||||| |||||||  |||||||| |||| ||||| |||||||| ||| ||||||| ||| |||| || |||||    
T  23851 gactaagaagaatcgagacgggatggagaaatctcataccccagattgtttctatggatcaaggtatgaaagatatagttgaacttagtttgagttgcat 23950  T
Q  105 ttcacaact 113  Q
    |||||||||    
T  23951 ttcacaact 23959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1344 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1344
Description:

Target: scaffold1344; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 578 - 640
Alignment:
Q  24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttga 86  Q
    ||||||||||||| |||| |||| |||| ||||||| ||| ||||||||||||||||| ||||    
T  578 gggatggagaaatctcatgcctgggattattcctatagataatggtatgaatgatctaattga 640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 4590 - 4533
Alignment:
Q  24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta 81  Q
    ||||||||||||| |||| |||| |||||||||||| ||| ||||||||||| |||||    
T  4590 gggatggagaaatctcatgcctgggattgttcctatagataatggtatgaattatcta 4533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 73362 - 73305
Alignment:
Q  24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta 81  Q
    ||||||||||||| |||| |||| ||||||| |||| ||| |||||||||||||||||    
T  73362 gggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatcta 73305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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