View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_256 (Length: 223)
Name: NF10151A_low_256
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_256 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 421548 - 421410
Alignment:
| Q |
1 |
tacaagagtaactttcctattggtagagagagatgaggagatggagacaaaagtgttcagcttttttagggtgaaagtgagatcttttaagcgcacaacc |
100 |
Q |
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| T |
421548 |
tacaagagtaactttcctattggtagagagagatgaggagatggagacaaaagtgttcagcttttttagggtgaaagtgagatcttttaagcgcacaacc |
421449 |
T |
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| Q |
101 |
catttagcatagcagaaagaaagaaagaaagaaagaaag |
139 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |
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| T |
421448 |
catttagcatagcagaaacaaagaaagaaagaaagaaag |
421410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 421362 - 421332
Alignment:
| Q |
193 |
gagagagagtgtgtgtgataatagacttaat |
223 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
421362 |
gagagagagtgtgtgtgataatagacttaat |
421332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 139
Target Start/End: Original strand, 42974548 - 42974576
Alignment:
| Q |
111 |
agcagaaagaaagaaagaaagaaagaaag |
139 |
Q |
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| T |
42974548 |
agcagaaagaaagaaagaaagaaagaaag |
42974576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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