View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_259 (Length: 223)
Name: NF10151A_low_259
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_259 |
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Alignment Details
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 4008171 - 4008239
Alignment:
| Q |
119 |
gagataatccaaattctgttcacaatgatgttatacagtgcaaacgttacaaggaaacaactatcccaa |
187 |
Q |
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| T |
4008171 |
gagataatcctaattctgtccacaatgattttatacagtgcaaacgttacaaggaaacagctatcccaa |
4008239 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4016233 - 4016281
Alignment:
| Q |
1 |
taaaaaccttaaaatctccaaaagacattttcctcgataggaagaaaaa |
49 |
Q |
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| T |
4016233 |
taaaaacattcaaatctctaaaagacattttcctctataggaagaaaaa |
4016281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10219673 - 10219641
Alignment:
| Q |
1 |
taaaaaccttaaaatctccaaaagacattttcc |
33 |
Q |
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| T |
10219673 |
taaaaaccttaaaatcttcaaaagacattttcc |
10219641 |
T |
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