View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_264 (Length: 220)

Name: NF10151A_low_264
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_264
NF10151A_low_264
[»] chr2 (6 HSPs)
chr2 (23-220)||(2803204-2803401)
chr2 (33-107)||(33561499-33561573)
chr2 (34-107)||(29873586-29873659)
chr2 (47-132)||(13766795-13766882)
chr2 (35-107)||(30312825-30312897)
chr2 (32-76)||(31468797-31468841)
[»] chr6 (4 HSPs)
chr6 (30-107)||(8481962-8482039)
chr6 (46-107)||(5034882-5034943)
chr6 (66-107)||(27226675-27226716)
chr6 (35-107)||(6071168-6071240)
[»] chr5 (2 HSPs)
chr5 (23-137)||(10351209-10351325)
chr5 (35-107)||(36521946-36522018)
[»] chr4 (3 HSPs)
chr4 (54-132)||(42480533-42480611)
chr4 (30-76)||(22028412-22028458)
chr4 (35-107)||(34544142-34544215)
[»] chr1 (2 HSPs)
chr1 (30-76)||(32594761-32594807)
chr1 (35-107)||(1188638-1188710)
[»] chr8 (1 HSPs)
chr8 (30-107)||(4154326-4154402)
[»] chr3 (2 HSPs)
chr3 (66-107)||(260805-260846)
chr3 (55-132)||(32930698-32930775)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 2803204 - 2803401
Alignment:
Q  23 tgagatggacatcacactattacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtga 122  Q
    |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2803204 tgagttggacatcacacttttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtga 2803303  T
Q  123 gacttttaacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803304 gacttttaacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttg 2803401  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 33561499 - 33561573
Alignment:
Q  33 atcacactattacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 107  Q
    |||||||| ||||||||||| |||||||| |||||||||||||| ||||  ||||| | |||| |||||||||||    
T  33561499 atcacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccactt 33561573  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 29873586 - 29873659
Alignment:
Q  34 tcacactattacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 107  Q
    ||||||| |||| |||||| ||||| || |||||||||| ||| || |  ||||| ||||||||||||||||||    
T  29873586 tcacactcttactcaaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttcaacctccactt 29873659  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 13766882 - 13766795
Alignment:
Q  47 caaaacgttaagacattgagtttatgggtcatctc--ttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 132  Q
    |||||| ||||| ||||||||||||  ||||||||  ||||||| |||  ||||||||||||| | |||| ||||| |||||| ||||    
T  13766882 caaaaccttaagtcattgagtttattagtcatctcacttttataaaataatcaacctccacttttctaaacaatgttagacttctaac 13766795  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 30312897 - 30312825
Alignment:
Q  35 cacactattacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 107  Q
    |||||| ||||||||||| |||||  | | ||||||||||||||||   ||||| | ||||||||||||||||    
T  30312897 cacacttttacccaaaaccttaaggaaataagtttatgggtcatctaagttataaagtgttcaacctccactt 30312825  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 31468797 - 31468841
Alignment:
Q  32 catcacactattacccaaaacgttaagacattgagtttatgggtc 76  Q
    ||||||||| ||||||||||| ||||| || ||||||||||||||    
T  31468797 catcacactcttacccaaaaccttaaggcaatgagtttatgggtc 31468841  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 8482039 - 8481962
Alignment:
Q  30 gacatcacactattacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 107  Q
    |||| |||||| ||||||||||  ||||| || |||||||||| |||||||| |||||| | ||||||||||||||||    
T  8482039 gacaccacactcttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactt 8481962  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 5034882 - 5034943
Alignment:
Q  46 ccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 107  Q
    ||||||| |||| |||||||||| ||||||||||||  ||||| | || |||||||||||||    
T  5034882 ccaaaaccttaaaacattgagttgatgggtcatctcacttataaagtggtcaacctccactt 5034943  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 27226675 - 27226716
Alignment:
Q  66 gtttatgggtcatctcttttatagaatgttcaacctccactt 107  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  27226675 gtttatgggtcatctcatttataaaatgatcaacctccactt 27226716  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 6071240 - 6071168
Alignment:
Q  35 cacactattacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 107  Q
    |||||| ||| ||||||  ||||| || ||||||||||| |||||||  ||||| | ||||||||||||||||    
T  6071240 cacactcttatccaaaatcttaaggcaatgagtttatggatcatctcacttataaagtgttcaacctccactt 6071168  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 10351209 - 10351325
Alignment:
Q  23 tgagatggacatcacactattacccaaaacg--ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgt 120  Q
    |||||| ||||||||||| ||||||||||    |||||||| |||||||||||||||| ||   |||| |||||||||||||| ||| ||||   |||||    
T  10351209 tgagatagacatcacacttttacccaaaaatatttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctccgcttttttagccaatgt 10351308  T
Q  121 gagacttttaacctaca 137  Q
    ||||||| |||| ||||    
T  10351309 gagacttctaacttaca 10351325  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 36521946 - 36522018
Alignment:
Q  35 cacactattacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 107  Q
    |||||| ||||||||||| ||||| || |  ||||||||||| |||| |||| ||| ||||||||||| ||||    
T  36521946 cacactcttacccaaaaccttaaggcaattggtttatgggtcctctcatttaaagagtgttcaacctcaactt 36522018  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 42480611 - 42480533
Alignment:
Q  54 ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 132  Q
    ||||||||| |||||||||| |||||||  ||| | | |||||||||||||||| || ||||| | |||||||||||||    
T  42480611 ttaagacatcgagtttatggatcatctcacttacatattgttcaacctccactttttcaaatagtatgagacttttaac 42480533  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 22028412 - 22028458
Alignment:
Q  30 gacatcacactattacccaaaacgttaagacattgagtttatgggtc 76  Q
    |||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  22028412 gacaccacactcttacccaaaacattaagacaatgagtttatgggtc 22028458  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 34544215 - 34544142
Alignment:
Q  35 cacactattacccaaaa-cgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 107  Q
    |||||| |||||||||| | ||||| || |||||||||||||| |||| |||||| | || |||||||||||||    
T  34544215 cacactcttacccaaaaaccttaaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccactt 34544142  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 32594761 - 32594807
Alignment:
Q  30 gacatcacactattacccaaaacgttaagacattgagtttatgggtc 76  Q
    |||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  32594761 gacaccacactcttacccaaaaccttaagacaatgagtttatgggtc 32594807  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 1188638 - 1188710
Alignment:
Q  35 cacactattacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 107  Q
    |||||| ||||||||||| ||||  || |||||||||| ||| ||||  ||||| ||| ||||||||||||||    
T  1188638 cacacttttacccaaaaccttaaagcaatgagtttatgagtcttctcacttataaaatattcaacctccactt 1188710  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 4154326 - 4154402
Alignment:
Q  30 gacatcacactattacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 107  Q
    ||||||||||  ||||||||||  ||||| || |||||||||||||| ||||  ||||| | ||||||||||||||||    
T  4154326 gacatcacacacttacccaaaatattaaggcaatgagtttatgggtc-tctcacttataaagtgttcaacctccactt 4154402  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 260805 - 260846
Alignment:
Q  66 gtttatgggtcatctcttttatagaatgttcaacctccactt 107  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  260805 gtttatgggtcatctcatttataaaatgatcaacctccactt 260846  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 32930775 - 32930698
Alignment:
Q  55 taagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 132  Q
    |||||||||||||||||| ||||||||  ||||| |||||||||| || |||| | |||| ||| | |||||| ||||    
T  32930775 taagacattgagtttatgagtcatctcacttataaaatgttcaacttctacttttctaaacaatataagacttctaac 32930698  T

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