View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_270 (Length: 216)

Name: NF10151A_low_270
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_270
NF10151A_low_270
[»] chr2 (19 HSPs)
chr2 (25-195)||(44624828-44624998)
chr2 (25-175)||(44615455-44615605)
chr2 (25-186)||(39153105-39153266)
chr2 (34-162)||(39472763-39472891)
chr2 (25-162)||(39138692-39138826)
chr2 (31-186)||(39387469-39387624)
chr2 (25-159)||(39371163-39371297)
chr2 (25-186)||(39216703-39216864)
chr2 (25-186)||(39396627-39396788)
chr2 (32-161)||(39205742-39205871)
chr2 (31-186)||(39196485-39196640)
chr2 (31-186)||(39413004-39413159)
chr2 (25-159)||(39380496-39380630)
chr2 (32-154)||(44895114-44895236)
chr2 (35-161)||(39478294-39478420)
chr2 (31-186)||(39421161-39421313)
chr2 (32-161)||(39223764-39223893)
chr2 (25-177)||(39188738-39188890)
chr2 (25-173)||(39604362-39604510)
[»] chr8 (3 HSPs)
chr8 (25-162)||(44730161-44730298)
chr8 (25-187)||(44949869-44950031)
chr8 (25-184)||(45343011-45343170)
[»] chr5 (2 HSPs)
chr5 (31-187)||(17060698-17060854)
chr5 (31-186)||(33562341-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (25-187)||(5849-6011)
[»] chr7 (1 HSPs)
chr7 (25-162)||(19808949-19809083)
[»] chr6 (1 HSPs)
chr6 (32-89)||(16114420-16114477)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 44624828 - 44624998
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44624828 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcga 44624927  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctggatacaag 195  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  44624928 tttatggattgcatacttattttgatgaagatgaagtctaaaagctttttggatctgttgctggatacaag 44624998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 44615455 - 44615605
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||    
T  44615455 agagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcga 44615554  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtcataaagctttttg 175  Q
    |||| ||||||  || ||| |||||||||||||||||| | ||| ||||||    
T  44615555 tttacggattggttaattactttgatgaagatgaagtcttcaagatttttg 44615605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 39153105 - 39153266
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||| ||||||||||| || || | ||| ||||||||||| || ||||||||||||||||||||||||| |||||| || |||||| || |||||||||    
T  39153105 agagaagaagcattgaaactcgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcga 39153204  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 186  Q
    |||||||||||  ||||| ||| ||| ||||||||||| |  ||||||||| || |||||||    
T  39153205 tttatggattggttacttctttcgataaagatgaagtcttggagctttttgcatttgttgct 39153266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 162
Target Start/End: Complemental strand, 39472891 - 39472763
Alignment:
Q  34 gcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggat 133  Q
    ||||||||||| || | ||| ||||||| ||||||||||||||||||||||||||||||||  ||||| || |||||| || ||||||| ||||||| ||    
T  39472891 gcattgaagctcgcacttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaat 39472792  T
Q  134 tgcatacttattttgatgaagatgaagtc 162  Q
    ||| ||||| |||||||||||||||||||    
T  39472791 tgcttacttcttttgatgaagatgaagtc 39472763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 39138692 - 39138826
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||| ||||||||||||||||| | | |  |||||||||||||||||   ||||||||||||||| ||| ||||||||| |||||| ||||||||||      
T  39138692 agagaagaagcattgaagctagcacttaatctgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcag 39138788  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtc 162  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  39138789 tttatgaattgcttacttattttgatgaagatgaagtc 39138826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 39387624 - 39387469
Alignment:
Q  31 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 130  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  ||||| || |||||  || ||||||| |||||||    
T  39387624 gaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatg 39387525  T
Q  131 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 186  Q
    |  ||| |  ||||||||| |||||||||||  |  ||||||||| || |||||||    
T  39387524 ggctgcttgattattttgacgaagatgaagttttggagctttttgcatttgttgct 39387469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 39371163 - 39371297
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||||||||||||||||||||| | |||  ||||||| |||||||||||||||| | ||||| |||||| |||||| || ||||||||| ||||||| |    
T  39371163 agagatgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaa 39371262  T
Q  125 tttatggattgcatacttattttgatgaagatgaa 159  Q
     ||||||||||  ||||| ||||||||||||||||    
T  39371263 attatggattggttacttcttttgatgaagatgaa 39371297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 39216703 - 39216864
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||| |||||||||||||||||   ||| |||||| |||||||||  ||||||||| |||||||||||| ||||||||| |||||  || ||||||| |    
T  39216703 agagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaa 39216802  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 186  Q
    |||||||||||  ||||| ||||| ||||||||||||  |  ||||||||| ||||||||||    
T  39216803 tttatggattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgct 39216864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 39396788 - 39396627
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||| |||||| |||||||||| | ||| |||| |||| |||| | ||||||||||||||||||||||| |||||| || ||| | ||| ||||||| |    
T  39396788 agagaagaagcactgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaa 39396689  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 186  Q
    |||||||||||| ||||| ||| ||||||||||||||  |  ||||||||| ||| ||||||    
T  39396688 tttatggattgcttacttctttcgatgaagatgaagttttggagctttttgcatcggttgct 39396627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 39205871 - 39205742
Alignment:
Q  32 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 131  Q
    ||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||| ||| |||||| || |||||| || ||||||||||||||      
T  39205871 aagcattgaagctagcatttgacttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataa 39205772  T
Q  132 attgcatacttattttgatgaagatgaagt 161  Q
    ||||| |  || ||||||| ||||||||||    
T  39205771 attgcttgattcttttgataaagatgaagt 39205742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 39196640 - 39196485
Alignment:
Q  31 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 130  Q
    |||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||||| |||||| || |||||  || ||||||| ||||||     
T  39196640 gaagcattgaagctagcatttgatttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttata 39196541  T
Q  131 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 186  Q
     ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  39196540 aattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 39196485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 39413159 - 39413004
Alignment:
Q  31 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 130  Q
    ||||||||||||||||| | ||| |||||||||||| ||||||||||||| ||||| ||||||| ||||||  | ||||| ||| |||||||  ||| ||    
T  39413159 gaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttgtg 39413060  T
Q  131 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 186  Q
    |||||  ||||| ||| |||||||||||| || |  ||||||||| || |||||||    
T  39413059 gattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgct 39413004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 39380630 - 39380496
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||| |||||| ||| |||||| | ||| ||||||||| |||| | ||| ||||||||| ||||| ||| |||||| ||||||||| || ||||||| |    
T  39380630 agagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaa 39380531  T
Q  125 tttatggattgcatacttattttgatgaagatgaa 159  Q
    |||||||||||| ||||| ||| ||||||||||||    
T  39380530 tttatggattgcttacttctttcgatgaagatgaa 39380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 44895236 - 44895114
Alignment:
Q  32 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 131  Q
    |||||||||||||||| | | | || ||||||||||| |||| |||||||||||||||||||| |||||| || |||||| || ||||||| ||||||||    
T  44895236 aagcattgaagctagcacataaattcaaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatgg 44895137  T
Q  132 attgcatacttattttgatgaag 154  Q
    ||||  ||||| ||| |||||||    
T  44895136 attgattacttctttcgatgaag 44895114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 39478420 - 39478294
Alignment:
Q  35 cattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggatt 134  Q
    ||||||||||||| | ||| ||||||||| |||| | |||||||||||||||||||| ||  ||||| |  |||||| || ||||||| |||||||||||    
T  39478420 cattgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggatt 39478321  T
Q  135 gcatacttattttgatgaagatgaagt 161  Q
    || ||||| ||| || |||| ||||||    
T  39478320 gcttacttctttcgaagaaggtgaagt 39478294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 39421313 - 39421161
Alignment:
Q  31 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 130  Q
    |||||||||||||| || | ||| ||||||||||| ||| |||||||||||||||||  |||   ||||||||| |||||| || ||||||| |||||      
T  39421313 gaagcattgaagctcgctcttgatttgaaagctaatatggaagaaaatactgaaaataattt---ggttctcggttttctactgcttttgtcaatttacc 39421217  T
Q  131 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 186  Q
     ||||  |||||||||  |||||||||||||  |  ||||||||| || |||||||    
T  39421216 aattggttacttatttcaatgaagatgaagtgttggagctttttgcatttgttgct 39421161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 39223764 - 39223893
Alignment:
Q  32 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 131  Q
    ||||||||||||||||   ||| || ||||  ||||||||||| ||||||||||| ||||||| |||||| || |||||  || ||||||| ||||||      
T  39223764 aagcattgaagctagcatatgatttaaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataa 39223863  T
Q  132 attgcatacttattttgatgaagatgaagt 161  Q
    ||||| |  ||  |||||||||||||||||    
T  39223864 attgcttgattcatttgatgaagatgaagt 39223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 39188890 - 39188738
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||| || ||| |||| ||||| | ||| || |||||||||||||||||||||| || ||||||||||| |||||| || |||||| |  || | || |    
T  39188890 agagaggatgcaatgaaactagcacttgatttaaaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttctactccttctatcaa 39188791  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtcataaagctttttgga 177  Q
    ||||||| |||  | ||| |||  |||||||||| ||  ||||||||||||||    
T  39188790 tttatggtttggttccttctttcaatgaagatgatgttttaaagctttttgga 39188738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 39604362 - 39604510
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||| |||||| |||||||||| | | | |||||| ||||||| |  |||||||| |||||||   |||  ||||| || |||||| |  || |||| |    
T  39604362 agagaagaagcaatgaagctagcacttaatttgaaatctaacataagtgaaaataccgaaaatttggtggcagttctgggttttctactccttgtgtcaa 39604461  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtcataaagctttt 173  Q
    |||||||||||  | ||| ||| ||||||||||||||  ||||||||||    
T  39604462 tttatggattggctccttctttcgatgaagatgaagttttaaagctttt 39604510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 44730161 - 44730298
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  44730161 agagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttgacga 44730260  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtc 162  Q
    ||||| |||||| |||||| ||||||| ||||||||||    
T  44730261 tttatagattgcttacttactttgatggagatgaagtc 44730298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 44950031 - 44949869
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||||||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  |||    
T  44950031 agagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacga 44949932  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 187  Q
    |||||||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  44949931 tttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 44949869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 45343011 - 45343170
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||| |||||||| |||||||| | |||||||||||||||| |||||| |||||||||||| || ||| | ||||| || |||||| |||||||||| |    
T  45343011 agagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaa 45343110  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttg 184  Q
    || ||| ||||| ||||| ||||||| ||||||||||| |  ||||||||| ||||||||    
T  45343111 ttcatgtattgcttacttcttttgataaagatgaagtcttggagctttttgtatctgttg 45343170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 17060698 - 17060854
Alignment:
Q  31 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 130  Q
    ||||| ||||||||||| | |||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||| ||||| |||||| ||||||    
T  17060698 gaagctttgaagctagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatg 17060797  T
Q  131 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 187  Q
    |||||  ||||||||||||| ||||||||||| |  | ||||||| |||||||||||    
T  17060798 gattgtttacttattttgatcaagatgaagtcttggatctttttgcatctgttgctg 17060854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 33562341 - 33562496
Alignment:
Q  31 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 130  Q
    |||||||||||||||||   ||| ||||||||||||||||||||||||||||||  || ||||| |||||| || |||||  || ||||||| ||||||     
T  33562341 gaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaatttata 33562440  T
Q  131 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 186  Q
     ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  33562441 aattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 33562496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 6011 - 5849
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||||||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  |||    
T  6011 agagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacga 5912  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 187  Q
    |||||||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  5911 tttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 5849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 19808949 - 19809083
Alignment:
Q  25 agagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcga 124  Q
    ||||| ||| ||||||||||||| | ||| ||||||||||||||||||   | ||||||||||||| ||| |||||| || |||||| || |||||||      
T  19808949 agagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa---agtactgaaaattctctggtggttcttggttttctactgcttttgtcag 19809045  T
Q  125 tttatggattgcatacttattttgatgaagatgaagtc 162  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  19809046 tttatgaattgcttacttattttgatgaagatgaagtc 19809083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 16114420 - 16114477
Alignment:
Q  32 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattc 89  Q
    ||||||||||||||||||| || ||||||||| |||||| ||| |||||| |||||||    
T  16114420 aagcattgaagctagcgcgcgatttgaaagcttacatgagagagaatactaaaaattc 16114477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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