View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_274 (Length: 214)

Name: NF10151A_low_274

Description: NF10151A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10151A_low_274

[»] chr5 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 133; E-Value: 2e-69

Query Start/End: Original strand, 19 - 196

Target Start/End: Complemental strand, 31998088 - 31997911

Alignment:

Q	19	aaataggtcaaaagactttgagtnnnnnnnttaaaatccaattcttatgcagagccagaaagataaacaaaccaactgttaccatgaaatttagcagcta	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31998088	aaataggtcaaaagacttcgattaaaaaaattaaaatccaattcttatgcagagccagaaagataaacaaaccaactgtgaccaagaaatttagcagcta	31997989	T

Q	119	atatactcccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcat	196	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	31997988	atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacgtccacgaggcat	31997911	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 111 - 193

Target Start/End: Complemental strand, 15843120 - 15843038

Alignment:

Q	111	agcagctaatatactcccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgagg	193	Q
		\|\|\|\|\| \|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15843120	agcaggtaatgtacttccctccagaggcacattgccccctccaacaagaccatctcctactatgcaagtccacatccacgagg	15843038	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]