View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_28 (Length: 415)
Name: NF10151A_low_28
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 23 - 415
Target Start/End: Original strand, 30709253 - 30709669
Alignment:
| Q |
23 |
actgggcatatattaggttgctccacttgc--tgtgtttcaggaacagtctccctcagagaagaagcgtcaatagacacactagaagatgtcacaacacc |
120 |
Q |
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| T |
30709253 |
actgggcatatattaggttgctccacttgccctgtgtttcaagaacagtctccctcggagaagaagtggcagtagacacactagaagatgtcacaacacc |
30709352 |
T |
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| Q |
121 |
taatgtattcaacagctgaaccagctctaaaataggagtattttcctc--tctgttgaatcgttcccaaagtatcaatcggat--tgctccacaatatct |
216 |
Q |
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| T |
30709353 |
taatgtattcaacagctgaaccagctctaaaataggagtattttcctctatgtgttgaatcgttcccaaagtatcaatcggattgtgctccacaatatct |
30709452 |
T |
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| Q |
217 |
ataacattctccaatggaaaatggaaggaggtgctggactgttctccgttgtggcgttgatgcaccttcaatcac-----------------atttgcca |
299 |
Q |
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| T |
30709453 |
ataacattctccaatggaaaatggaaggaggttccggactgttctcggttgtggcgttgctgcaccttcaatcacatttgccacctcagtcaatttgcca |
30709552 |
T |
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| Q |
300 |
cctcagtcacctggacatttacaagtatc-gttcaggttcattgtgttgaggttcctttggtatttcaggtatctgttccatgacactaattattcggaa |
398 |
Q |
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| T |
30709553 |
cctcagtcacccggacattttcaagtatcggttcaggttcattgtgttgaggttcctttggtatttcaggtatctgttccatgacactaattattcggaa |
30709652 |
T |
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| Q |
399 |
atattttactttgtgtt |
415 |
Q |
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| T |
30709653 |
atattttactttgtgtt |
30709669 |
T |
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Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 31 - 308
Target Start/End: Complemental strand, 13231764 - 13231488
Alignment:
| Q |
31 |
tatattaggttgctccacttgctgtgtttcaggaacagtctccctcagagaagaagcgtcaatagacacactagaagatgtcacaacacctaatgtattc |
130 |
Q |
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| T |
13231764 |
tatactaggttgctacaccttttgtgtttcaagaaccatctccctcctagaagaagtggcagtagacacaccaatagatgtcgcaacagctgatgtcttc |
13231665 |
T |
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| Q |
131 |
aacagctgaaccagctctaaaataggagtattttcctctctgttgaatcgttcccaaagtatcaatcggattgc--tccacaatatctataacattctcc |
228 |
Q |
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| T |
13231664 |
aacggcttaatcggctctaaaatatgagtattatgc-----gttgaaccattcccaaagtatcaatctgattgcgctccacaatatctattacattctcc |
13231570 |
T |
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| Q |
229 |
aatggaaaatggaaggaggtgctggactgt--tctccgttgtggcgttgatgcaccttcaatcacatttgccacctcagtca |
308 |
Q |
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| T |
13231569 |
aatcgaaaatggaaggaggtgccaaactgtcctctcggttgcagcgtttatgcaccttcaatcacatttgccacctcagtca |
13231488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 350
Target Start/End: Original strand, 23850844 - 23850934
Alignment:
| Q |
259 |
tctccgttgtggcgttgatgcaccttcaatcacatttgccacctcagtcacctggacatttacaagtatc-gttcaggttcattgtgttgagg |
350 |
Q |
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| T |
23850844 |
tctctgttgcggcattaatgcaccttcaatcgcattttccgcctc-gtcacctggacattttcaa-tatcggctcacgttcattgtgttgagg |
23850934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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