View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_280 (Length: 208)
Name: NF10151A_low_280
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_280 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 47436878 - 47436713
Alignment:
| Q |
19 |
gaaacaattgagttgtgagctaggtcttacaccgacgcaaatcaagttctggtttcaaaacaagcgcaaccaaattaaggtaaaggattatgaaaaccct |
118 |
Q |
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| T |
47436878 |
gaaacaattgagttgtgagctaggccttacacctgcgcaaatcaagttctagtttcaaaacaagcgcaaccaaattaaggtaaaggattatgaaaaccct |
47436779 |
T |
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| Q |
119 |
actgaaatgtgagatcttacatgcatggtgaacccttaaaaataaatgtgtatttcctctggtctc |
184 |
Q |
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| T |
47436778 |
attgaaatttgagatcttacatgcacggtgaacccttaaaaataaatgtgtatttcctctggtctc |
47436713 |
T |
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