View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_283 (Length: 205)

Name: NF10151A_low_283
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_283
NF10151A_low_283
[»] chr1 (17 HSPs)
chr1 (89-194)||(5800217-5800322)
chr1 (90-194)||(36672231-36672335)
chr1 (90-188)||(6079593-6079691)
chr1 (93-194)||(39627831-39627932)
chr1 (89-186)||(46153231-46153328)
chr1 (89-194)||(46152177-46152282)
chr1 (93-172)||(31216477-31216556)
chr1 (90-188)||(11444271-11444369)
chr1 (90-188)||(33196265-33196363)
chr1 (86-188)||(33485924-33486026)
chr1 (91-188)||(12979890-12979987)
chr1 (122-188)||(22667297-22667363)
chr1 (90-188)||(26921676-26921774)
chr1 (90-188)||(41903403-41903501)
chr1 (90-182)||(42647710-42647802)
chr1 (90-146)||(51401811-51401867)
chr1 (90-188)||(45427127-45427224)
[»] chr8 (16 HSPs)
chr8 (90-194)||(2165055-2165159)
chr8 (90-194)||(9178720-9178824)
chr8 (90-188)||(33628670-33628768)
chr8 (90-188)||(19725354-19725452)
chr8 (90-194)||(32718955-32719059)
chr8 (91-157)||(44501990-44502056)
chr8 (90-194)||(43460652-43460756)
chr8 (90-188)||(7087934-7088032)
chr8 (86-184)||(16871561-16871659)
chr8 (90-184)||(36496145-36496239)
chr8 (90-188)||(24247742-24247840)
chr8 (89-194)||(4471443-4471548)
chr8 (131-188)||(12980321-12980378)
chr8 (93-194)||(13197797-13197898)
chr8 (131-188)||(3642982-3643039)
chr8 (129-184)||(31940726-31940781)
[»] chr4 (28 HSPs)
chr4 (90-194)||(16917526-16917630)
chr4 (89-194)||(17616406-17616511)
chr4 (85-194)||(36188196-36188305)
chr4 (90-194)||(45953954-45954058)
chr4 (90-194)||(27734910-27735014)
chr4 (89-194)||(34791879-34791984)
chr4 (90-184)||(50716525-50716619)
chr4 (90-184)||(54851333-54851427)
chr4 (80-194)||(56272880-56272994)
chr4 (88-188)||(20927749-20927849)
chr4 (88-188)||(25814379-25814479)
chr4 (89-188)||(28013030-28013129)
chr4 (85-188)||(52104403-52104506)
chr4 (90-188)||(30839243-30839341)
chr4 (92-188)||(40319308-40319404)
chr4 (93-188)||(22413868-22413963)
chr4 (90-184)||(46548674-46548768)
chr4 (90-188)||(52759787-52759885)
chr4 (88-188)||(30951121-30951222)
chr4 (88-173)||(34936553-34936638)
chr4 (92-188)||(48253943-48254039)
chr4 (91-194)||(24347137-24347240)
chr4 (87-173)||(48058799-48058885)
chr4 (90-188)||(23390808-23390906)
chr4 (90-188)||(49143947-49144045)
chr4 (129-188)||(46564752-46564811)
chr4 (100-194)||(39512958-39513052)
chr4 (130-184)||(4540597-4540651)
[»] chr5 (13 HSPs)
chr5 (87-194)||(35777378-35777485)
chr5 (91-194)||(41609387-41609490)
chr5 (93-194)||(14575476-14575577)
chr5 (91-194)||(14721356-14721459)
chr5 (93-194)||(664749-664850)
chr5 (85-188)||(231806-231909)
chr5 (124-194)||(972451-972521)
chr5 (90-188)||(14054721-14054819)
chr5 (94-188)||(32092389-32092483)
chr5 (90-179)||(15264360-15264449)
chr5 (125-188)||(11489624-11489687)
chr5 (90-194)||(43167244-43167348)
chr5 (90-188)||(7456208-7456306)
[»] chr3 (19 HSPs)
chr3 (90-193)||(8324691-8324794)
chr3 (90-194)||(54911050-54911154)
chr3 (90-194)||(40284213-40284317)
chr3 (85-188)||(47243993-47244096)
chr3 (87-194)||(52457945-52458052)
chr3 (85-188)||(41574732-41574834)
chr3 (85-188)||(47599944-47600047)
chr3 (96-188)||(43744231-43744323)
chr3 (90-194)||(52178953-52179057)
chr3 (90-188)||(54831131-54831229)
chr3 (89-194)||(19608593-19608698)
chr3 (90-194)||(41902251-41902355)
chr3 (85-188)||(46948616-46948719)
chr3 (128-188)||(25558658-25558718)
chr3 (90-194)||(32621641-32621745)
chr3 (130-188)||(542672-542730)
chr3 (88-194)||(53444844-53444950)
chr3 (135-188)||(13451465-13451518)
chr3 (88-188)||(4817074-4817174)
[»] chr2 (16 HSPs)
chr2 (93-194)||(3911528-3911629)
chr2 (90-194)||(13119119-13119223)
chr2 (90-194)||(36023889-36023992)
chr2 (90-194)||(36430612-36430716)
chr2 (90-188)||(325751-325849)
chr2 (90-194)||(39307313-39307417)
chr2 (90-194)||(44544348-44544452)
chr2 (89-184)||(29943867-29943962)
chr2 (80-194)||(13507244-13507358)
chr2 (85-194)||(22595038-22595147)
chr2 (93-179)||(15354749-15354835)
chr2 (90-188)||(36054253-36054351)
chr2 (90-188)||(2640225-2640323)
chr2 (90-188)||(6279535-6279633)
chr2 (88-188)||(41515831-41515931)
chr2 (89-188)||(5155693-5155792)
[»] chr7 (20 HSPs)
chr7 (86-194)||(968495-968603)
chr7 (90-194)||(20883926-20884030)
chr7 (90-194)||(24189051-24189155)
chr7 (89-194)||(38034722-38034827)
chr7 (90-184)||(45704501-45704595)
chr7 (90-188)||(24203175-24203273)
chr7 (90-184)||(39925795-39925889)
chr7 (92-169)||(31603563-31603639)
chr7 (93-194)||(37118337-37118438)
chr7 (101-188)||(15877382-15877469)
chr7 (90-188)||(48900512-48900610)
chr7 (89-170)||(19503119-19503200)
chr7 (90-194)||(29273284-29273388)
chr7 (92-184)||(37001001-37001093)
chr7 (122-188)||(30819757-30819823)
chr7 (114-194)||(46879894-46879975)
chr7 (90-194)||(29982057-29982161)
chr7 (129-188)||(27276085-27276144)
chr7 (129-188)||(35567015-35567074)
chr7 (95-168)||(13806688-13806762)
[»] scaffold0059 (1 HSPs)
scaffold0059 (89-194)||(70693-70798)
[»] scaffold0008 (1 HSPs)
scaffold0008 (89-194)||(262824-262929)
[»] scaffold0190 (1 HSPs)
scaffold0190 (92-194)||(5700-5802)
[»] chr6 (11 HSPs)
chr6 (90-184)||(32715915-32716009)
chr6 (90-188)||(22735010-22735108)
chr6 (92-194)||(26611770-26611872)
chr6 (85-188)||(5078455-5078558)
chr6 (93-188)||(10091795-10091890)
chr6 (89-194)||(2198084-2198189)
chr6 (85-188)||(3448096-3448199)
chr6 (88-185)||(33610700-33610796)
chr6 (132-188)||(31394497-31394553)
chr6 (96-188)||(18667693-18667785)
chr6 (96-172)||(21970631-21970707)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 5800322 - 5800217
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  5800322 tgggagtttctacggtacactcttcaattaaggtgtatcagtacacctatttcataaatctataagttaacgataattttaatgtgataaagagatattt 5800223  T
Q  189 ttcgac 194  Q
     |||||    
T  5800222 atcgac 5800217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 36672335 - 36672231
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  36672335 gggagtttctacgttacacccttcaattaaggtgtaccagtacatctatttcataaatctataagttaacgataatttttatgtgataaagagatattta 36672236  T
Q  190 tcgac 194  Q
    |||||    
T  36672235 tcgac 36672231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 6079593 - 6079691
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6079593 gggagtttctacagtacacccttctattaaggtgtaccagtacacctatttcataaatctataagttaacgataatttttatgtgataaagagatattt 6079691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 39627831 - 39627932
Alignment:
Q  93 agtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttttcg 192  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  39627831 agtttctactgtacacccttcaattaaggtgtaccaatacacctatttcataaatctataagttaacgataatttttatgtgataaagagatatttatcg 39627930  T
Q  193 ac 194  Q
    ||    
T  39627931 ac 39627932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 46153231 - 46153328
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatat 186  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46153231 tgggagtttctacggtacacccttcagttaaggagtaccagtacacctatttcataaatatataagttaacgataatttttatgtgataaagagatat 46153328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 46152177 - 46152282
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||||||||  |||| || ||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46152177 tgggagtttctacggtacacctttcagttaaggagtatcagtacatctatttcataaatatataagttaacgataatttttatgtgataaagagatattt 46152276  T
Q  189 ttcgac 194  Q
     |||||    
T  46152277 atcgac 46152282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 31216556 - 31216477
Alignment:
Q  93 agtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatg 172  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31216556 agtttctacggtacacccttcaattaaggtgtaccagtacacctatttcataaatctataagttaacgataatttttatg 31216477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 11444271 - 11444369
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||||||| ||| |||| || |||||| |||||||||||||||||||  ||||||||| ||| |||||||||| ||||| ||||||||    
T  11444271 gggagtttctacggtacacccttaaattaagatgtaccggtacacctatttcataaatcaataagttaatgattatttttatgtaataaatagatattt 11444369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 33196265 - 33196363
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||| |||||||  || |||| | |||||||||||||||||||||||||||  |||||||| |||| |||||||||| ||||||||||||||    
T  33196265 gggagtttctatggtacacctttaaattaaagtgtaccagtacacctatttcataaatcaataagttatcgatcatttttatgtaataaagagatattt 33196363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 33485924 - 33486026
Alignment:
Q  86 atttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagata 185  Q
    ||||| ||||||||| ||||||||||| |||| | ||||| || ||||||||||||||||||  |||||||| | || |||||||||| |||||||||||    
T  33485924 atttgagagtttctatggtacactcttaaattaaagtgtatcaatacacctatttcataaatcaataagttatcaattatttttatgtaataaagagata 33486023  T
Q  186 ttt 188  Q
    |||    
T  33486024 ttt 33486026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 12979987 - 12979890
Alignment:
Q  91 ggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||| ||||||| || | || || |||||| |||||||||||||||||||  ||||||||| ||| |||||||||| ||||||||||||||    
T  12979987 ggagtttctacagtacacttttaatttaagatgtaccggtacacctatttcataaatcaataagttaatgattatttttatgtaataaagagatattt 12979890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 22667297 - 22667363
Alignment:
Q  122 tgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||||||||||||||  |||||||| |||| |||||||||| ||||||||||||||    
T  22667297 tgtaccagtacacctatttcataaatcaataagttatcgatcatttttatgtaataaagagatattt 22667363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 26921676 - 26921774
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||||||| ||| || | || |||||| |||||||||||||||||||  ||| ||||| ||| || ||||||| ||||||||||||||    
T  26921676 gggagtttctacggtacacccttaaactaagatgtaccggtacacctatttcataaatcaatacgttaatgattatctttatgtaataaagagatattt 26921774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 41903501 - 41903403
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||| || |||||| |||| |||| | ||||||||||| | |||||||||||||  |||||||| |||| |||||||||| ||||||||||||||    
T  41903501 gggagtttttatggtacattcttaaattaaagtgtaccagtatatctatttcataaattaataagttatcgatcatttttatgtaataaagagatattt 41903403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 42647802 - 42647710
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagag 182  Q
    |||||||||||  |||||| ||| |||| ||||||||| |||||||| ||||||||||  |||||||||  || |||||||||| | ||||||    
T  42647802 gggagtttctattgtacacccttaaattaaggtgtaccggtacacctgtttcataaatcaataagttaaatatcatttttatgtaacaaagag 42647710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 51401811 - 51401867
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaa 146  Q
    ||||||||||||||||||| ||  |||| |||||||||| |||||||||||||||||    
T  51401811 gggagtttctacggtacaccctcaaattaaggtgtaccaatacacctatttcataaa 51401867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 45427127 - 45427224
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||| |||||| ||| || | || |||||| |||||||||||||||||||  ||| ||| | |||  ||||||||| ||||||||||||||    
T  45427127 gggagtttctactgtacacccttaaactaagatgtaccggtacacctatttcataaatcaatacgttgatgat-ttttttatgtaataaagagatattt 45427224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 2165159 - 2165055
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  2165159 gggagtttctacggtacaccctgcaattaaggtgtaccagtacacctatttcataaatttataagttaacgataatttttatgtgataaagagatattta 2165060  T
Q  190 tcgac 194  Q
    |||||    
T  2165059 tcgac 2165055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 9178720 - 9178824
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||  |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  9178720 gggagtttctacggtacatccttcaattaaggtgtatcagtacacctatttcataaatctataagttaacgataatttttatgtgataaagagatattta 9178819  T
Q  190 tcgac 194  Q
    |||||    
T  9178820 tcgac 9178824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 33628768 - 33628670
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||| ||||||| ||| |||| | |||||||||||||||||||||||||||  |||||||| |||| |||||||||| ||||||||||||||    
T  33628768 gggagtttctatggtacacccttaaattaaagtgtaccagtacacctatttcataaatcaataagttatcgatcatttttatgtaataaagagatattt 33628670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 19725452 - 19725354
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||||||| ||| |||| || |||||  ||||| |||||||||||||  ||||||||| |||||||||||||| ||||||||||||||    
T  19725452 gggagtttctacggtacacccttaaattaagatgtacaggtacatctatttcataaatcaataagttaatgataatttttatgtaataaagagatattt 19725354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 32718955 - 32719059
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||| ||| |||| ||||||||| |||| ||||||||||||||  ||||||||||||| |||||||||| | |||||  |||||     
T  32718955 gggagtttctacggtacacacttaaattaaggtgtaccggtactcctatttcataaattaataagttaacgatcatttttatgtaaaaaagaactatttg 32719054  T
Q  190 tcgac 194  Q
    |||||    
T  32719055 tcgac 32719059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 44501990 - 44502056
Alignment:
Q  91 ggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagtta 157  Q
    |||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||    
T  44501990 ggagtttctacggtacacccttcaattaaggtgtactagtacacctatttcataaatctataagtta 44502056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 43460756 - 43460652
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||| ||||||| ||| |||| ||||||||| |||||||| ||||||||||  ||||| ||||||| |||||||||| | |||||| |||||     
T  43460756 gggagtttctatggtacacccttaaattaaggtgtaccggtacacctgtttcataaatcaataagctaacgatcatttttatgtaaaaaagagctatttg 43460657  T
Q  190 tcgac 194  Q
    |||||    
T  43460656 tcgac 43460652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 7088032 - 7087934
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||| |||| || ||| |||| | ||||| |||||||||||||||||||||  ||||||||  ||| |||||||||| ||||||||||||||    
T  7088032 gggagtttctatggtatacccttaaattaaagtgtatcagtacacctatttcataaatcaataagttattgatcatttttatgtaataaagagatattt 7087934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 16871561 - 16871659
Alignment:
Q  86 atttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    ||||||||||||||| | |||||  || |||| | |||||||||||||||||||||||||||  |||| ||| |||| |||||||||| ||||||||||    
T  16871561 atttgggagtttctatgatacaccattaaattaaagtgtaccagtacacctatttcataaatcaataacttatcgatcatttttatgtaataaagagat 16871659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 36496145 - 36496239
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||||||||||||||| |  |||  ||| ||||||||| ||||||||||||||||| |  |||||||||| || |||||||||| ||||||||||    
T  36496145 gggagtttctacggtatatccttagattaaggtgtaccggtacacctatttcataattcaataagttaacaatcatttttatgtaataaagagat 36496239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 24247840 - 24247742
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||| ||||||| ||| |||| | ||||||  |||||| |||| |||||||  |||||||| |||| |||||| ||| ||||||||||||||    
T  24247840 gggagtttctatggtacacccttaaattaaagtgtactggtacacttattccataaatcaataagttatcgatcatttttctgtaataaagagatattt 24247742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 4471443 - 4471548
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||||||||||   || |||| | |||||||||||||||| |||| | |||  |||| |||||||| |||||||||| | |||||| |||||    
T  4471443 tgggagtttctacggtacatctttaaattaatgtgtaccagtacacctgtttcgtgaattaataatttaacgatcatttttatgtaacaaagagctattt 4471542  T
Q  189 ttcgac 194  Q
     |||||    
T  4471543 gtcgac 4471548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 12980378 - 12980321
Alignment:
Q  131 acacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||||||||   |||||||||||| |||||||||| ||||||||||||||    
T  12980378 acacctatttcataaatcattaagttaacgatcatttttatgtaataaagagatattt 12980321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 13197898 - 13197797
Alignment:
Q  93 agtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttttcg 192  Q
    |||||||| ||||||  ||| |||| ||| ||||  ||||| |||||||||||||  ||||||||||||| ||| |||||| ||||||||||| || |||    
T  13197898 agtttctatggtacaaccttaaattaaggagtactggtacatctatttcataaatcaataagttaacgatcattattatgtaataaagagataattgtcg 13197799  T
Q  193 ac 194  Q
    ||    
T  13197798 ac 13197797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 3643039 - 3642982
Alignment:
Q  131 acacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||||||||  ||| ||||| ||| |||||||||| ||||||||||||||    
T  3643039 acacctatttcataaatcaatacgttaatgattatttttatgtaataaagagatattt 3642982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 31940781 - 31940726
Alignment:
Q  129 gtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    ||||||||||||||||| |  |||||||||| || |||||||||| ||||||||||    
T  31940781 gtacacctatttcataattcaataagttaacaatcatttttatgtaataaagagat 31940726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 16917630 - 16917526
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  16917630 gggagtttctacggtacacccttcaattaagatgtaccagtacacctatttcataaatctataagttaacgataatttttatgtgataaagagatattta 16917531  T
Q  190 tcgac 194  Q
    |||||    
T  16917530 tcgac 16917526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 17616406 - 17616511
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  17616406 tgggagtttctacggtacacccttcaattaaggtgtaccagtacacctattttataaatttataaattaacgataatttttatgtgataaagagatattt 17616505  T
Q  189 ttcgac 194  Q
     |||||    
T  17616506 atcgac 17616511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 36188305 - 36188196
Alignment:
Q  85 aatttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||| ||||||||||| ||||||  ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36188305 aattagggagtttctatggtacatcctttaattaaggtgtaccagtacacctatttcataaatttataagttaacgataatttttatgtgataaagagat 36188206  T
Q  185 atttttcgac 194  Q
    |||| |||||    
T  36188205 atttatcgac 36188196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 45954058 - 45953954
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | ||||||     
T  45954058 gggagtttctatggtacacccttcaattaaggtgtaccagtacacatatttcataaatctataagttaacgataatttttatgtgataaacaaatattta 45953959  T
Q  190 tcgac 194  Q
    |||||    
T  45953958 tcgac 45953954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 27734910 - 27735014
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||  ||| |||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||     
T  27734910 gggagtttctacggtacatccttgaattaagatgtaccagtacacctgtttcataaatctataagttaacgataatttttatatgataaagagatattta 27735009  T
Q  190 tcgac 194  Q
    |||||    
T  27735010 tcgac 27735014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 34791879 - 34791984
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||||||||||   || |||| ||||||||| |||||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||    
T  34791879 tgggagtttctacggtacatctttaaattaaggtgtaccggtacacctgtttcataaatttacaagttaacgataatttttatgtaataaagagatattt 34791978  T
Q  189 ttcgac 194  Q
     |||||    
T  34791979 atcgac 34791984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 50716619 - 50716525
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    ||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||| |  |||||||||| || |||||||||| ||||||||||    
T  50716619 gggagtttctacggtacacacttaaattaaggtgtaccggtacacctatttcataattcaataagttaacaatcatttttatgtaataaagagat 50716525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 54851427 - 54851333
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    ||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||| |  |||||||||| || |||||||||| ||||||||||    
T  54851427 gggagtttctacggtacacccttaaattaaggtgtaccggtacacctatttcataattcaataagttaacaatcatttttatgtaataaagagat 54851333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 56272994 - 56272880
Alignment:
Q  80 ataagaatttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaa 179  Q
    |||| |||| ||||||||||||||||||| ||| |||| ||||||||| |||||||| ||||||||||  ||||| ||||||| |||||||||| | |||    
T  56272994 ataataattagggagtttctacggtacacccttaaattaaggtgtaccggtacacctgtttcataaatcaataagctaacgatcatttttatgtaaaaaa 56272895  T
Q  180 gagatatttttcgac 194  Q
    ||| ||||| |||||    
T  56272894 gagttatttatcgac 56272880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 20927849 - 20927749
Alignment:
Q  88 ttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatt 187  Q
    ||||||||||||| ||||||| ||| |||| | |||||||| ||||||||||| ||||||  |||||||| |||| |||||||||| |||||||||||||    
T  20927849 ttgggagtttctatggtacacccttaaattaaagtgtaccaatacacctattttataaatcaataagttatcgatcatttttatgtaataaagagatatt 20927750  T
Q  188 t 188  Q
    |    
T  20927749 t 20927749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 25814379 - 25814479
Alignment:
Q  88 ttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatt 187  Q
    |||| |||||||| ||||||| ||| |||| | ||||| |||||||||||||||||||||  |||||||| |||| |||||||||| |||||||||||||    
T  25814379 ttggtagtttctatggtacacccttaaattaaagtgtatcagtacacctatttcataaattaataagttatcgatcatttttatgtaataaagagatatt 25814478  T
Q  188 t 188  Q
    |    
T  25814479 t 25814479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 28013030 - 28013129
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||| ||||||| ||| |||| | ||||||| |||||||||||||||||||  |||||||| |||| |||||| ||| ||||||||||||||    
T  28013030 tgggagtttctatggtacacccttaaattaaagtgtaccggtacacctatttcataaatcaataagttatcgatcatttttctgtaataaagagatattt 28013129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 52104403 - 52104506
Alignment:
Q  85 aatttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||| ||||||||||| ||||||  ||| |||| | ||||||||||||| |||||||||||||  |||||||| |||| |||||||||| ||||||||||    
T  52104403 aattagggagtttctatggtacatccttaaattaaagtgtaccagtacatctatttcataaatcaataagttatcgatcatttttatgtaataaagagat 52104502  T
Q  185 attt 188  Q
    ||||    
T  52104503 attt 52104506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 30839243 - 30839341
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||| ||||||| ||| |||| | ||||||||||||| |||||||||||||  |||||||| | || |||||||||| ||||||||||||||    
T  30839243 gggagtttctatggtacacccttaaattaaagtgtaccagtacatctatttcataaatcaataagttatcaatcatttttatgtaataaagagatattt 30839341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 40319404 - 40319308
Alignment:
Q  92 gagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||| ||||||| ||| |||| | ||||||| |||||||||||||||||||  |||||||| |||| |||||| ||| ||||||||||||||    
T  40319404 gagtttctatggtacacccttaaattaaagtgtaccggtacacctatttcataaatcaataagttatcgatcatttttctgtaataaagagatattt 40319308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 22413963 - 22413868
Alignment:
Q  93 agtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||| |||||||||  ||| |||| || |||||| |||||||||||||||||||  ||||||||| ||| |||||||||| ||||||||||||||    
T  22413963 agtttttacggtacatccttaaattaagatgtaccggtacacctatttcataaatcaataagttaatgattatttttatgtaataaagagatattt 22413868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 46548768 - 46548674
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    ||||||||||||||||||| ||| |||| ||||||||| ||||||||||||| ||| |  |||||||||| || |||||| ||| ||||||||||    
T  46548768 gggagtttctacggtacacccttaaattaaggtgtaccggtacacctatttcttaattcaataagttaacaatcatttttttgtaataaagagat 46548674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 52759787 - 52759885
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||| || ||||||| ||| |||| | |||||||||||||||||||||||||||  |||||||| | || |||||||| | ||||||||||||||    
T  52759787 gggagtttatatggtacacccttaaattaaagtgtaccagtacacctatttcataaatcaataagttatcaattatttttatataataaagagatattt 52759885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 30951121 - 30951222
Alignment:
Q  88 ttgggagtttctacggtacac-tcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatat 186  Q
    |||| |||||||| ||||||| | || |||| | |||||||||||||||||||||||||||  |||| ||| |||| |||||||||| ||||||||||||    
T  30951121 ttggaagtttctatggtacaccttttaaattaaagtgtaccagtacacctatttcataaatcaataaattatcgatcatttttatgtaataaagagatat 30951220  T
Q  187 tt 188  Q
    ||    
T  30951221 tt 30951222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 34936553 - 34936638
Alignment:
Q  88 ttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgt 173  Q
    ||||||||||||||| ||||| ||| |||| ||||||||| |||| ||| ||||||||||  ||||||||||||| ||||||||||    
T  34936553 ttgggagtttctacgatacacccttaaattaaggtgtaccggtactcctgtttcataaatcaataagttaacgatcatttttatgt 34936638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 48253943 - 48254039
Alignment:
Q  92 gagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||| |||||| |||| |||| | |||||  ||||||||||||||||||||  |||||||| | || |||||||||| ||||||||||||||    
T  48253943 gagtttctatggtacattcttaaattaaagtgtattagtacacctatttcataaatcaataagttatcaatcatttttatgtaataaagagatattt 48254039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 24347240 - 24347137
Alignment:
Q  91 ggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattttt 190  Q
    ||||||||||||||||||  || ||||  |||||||  ||| |||| |||||||||| || || ||||||||||||||||||| || ||||||||||| |    
T  24347240 ggagtttctacggtacacctttaaattagggtgtactggtatacctgtttcataaatctacaaattaacgataatttttatgtaatgaagagatatttat 24347141  T
Q  191 cgac 194  Q
    ||||    
T  24347140 cgac 24347137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 48058885 - 48058799
Alignment:
Q  87 tttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgt 173  Q
    |||||||||||||||||||||| ||| |||| |||| || | |||||||| ||||||||||  ||||| ||||||| ||||||||||    
T  48058885 tttgggagtttctacggtacacccttaaattaaggtatatcggtacacctgtttcataaatcaataagctaacgatcatttttatgt 48058799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 23390906 - 23390808
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||| | ||||| ||| |||| | ||||||  ||||| |||||||||||||  |||||||| |||| |||||| ||| ||||||||||||||    
T  23390906 gggagtttctatgatacacccttaaattaaagtgtactggtacatctatttcataaatcaataagttatcgatcatttttctgtaataaagagatattt 23390808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 49143947 - 49144045
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||| |||||||||  ||| |||| || ||||||  || | |||||||||||||  ||||||||| ||| |||||||||| ||||||||||||||    
T  49143947 gggagtttttacggtacatccttaaattaagatgtaccgatatatctatttcataaattaataagttaatgattatttttatgtaataaagagatattt 49144045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 46564752 - 46564811
Alignment:
Q  129 gtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||||||||||  ||| ||||| ||| |||||||||| ||||||||||||||    
T  46564752 gtacacctatttcataaatcaatacgttaatgattatttttatgtaataaagagatattt 46564811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 39513052 - 39512958
Alignment:
Q  100 acggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttttcgac 194  Q
    |||||||||  || |||| ||||||||| ||||||||||||||||| |  |||||||||  ||  ||||||||| |||||||||| ||| |||||    
T  39513052 acggtacacctttaaattaaggtgtaccggtacacctatttcataattcaataagttaataatcttttttatgtaataaagagatgtttatcgac 39512958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 4540597 - 4540651
Alignment:
Q  130 tacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||||||||||||||| |  |||||||||| || |||||||||| ||||||||||    
T  4540597 tacacctatttcataattcaataagttaacaatcatttttatgtaataaagagat 4540651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 4e-40; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 35777378 - 35777485
Alignment:
Q  87 tttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatat 186  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  35777378 tttgggagtttctacggtacacctttcaattaaggtgtaccagtacacctatttcataaatctataagttaacgataatttttatgtgataaagagatct 35777477  T
Q  187 ttttcgac 194  Q
    || |||||    
T  35777478 ttatcgac 35777485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 41609490 - 41609387
Alignment:
Q  91 ggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattttt 190  Q
    |||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  41609490 ggagtttctacggtacacccttcaattaaggtgtaccagtacatctatttcataaatctataagttaacgataatttttatgtgataaagagatatttat 41609391  T
Q  191 cgac 194  Q
    ||||    
T  41609390 cgac 41609387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 14575476 - 14575577
Alignment:
Q  93 agtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttttcg 192  Q
    |||||||| || |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||    
T  14575476 agtttctatggcacacccttcaattaaggtgtaccagtacacctatttcataaatctataagttaacgataatttttatgtgataaaaagatatttatcg 14575575  T
Q  193 ac 194  Q
    ||    
T  14575576 ac 14575577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 14721459 - 14721356
Alignment:
Q  91 ggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattttt 190  Q
    ||||||| |||||||||| |||||||| |||||||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |    
T  14721459 ggagtttttacggtacacccttcaattaaggtgtactagtatacctatttcataaatctataagttaaagataatttttatgtgataaagagatatttat 14721360  T
Q  191 cgac 194  Q
    ||||    
T  14721359 cgac 14721356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 664749 - 664850
Alignment:
Q  93 agtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttttcg 192  Q
    |||||||||||||||  |||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| |||    
T  664749 agtttctacggtacaaccttcaattaaggtgtaccagtacatctaattcataaatctataagttaacgataattttaatgtgataaagagatatttatcg 664848  T
Q  193 ac 194  Q
    ||    
T  664849 ac 664850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 231909 - 231806
Alignment:
Q  85 aatttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||||||||||||||| ||||||| ||| |||| | ||||||| |||||||||||| ||||||  |||||||| |||| |||||||||| ||||||||||    
T  231909 aatttgggagtttctatggtacacccttaaattaaagtgtaccggtacacctattttataaatcaataagttatcgatcatttttatgtaataaagagat 231810  T
Q  185 attt 188  Q
    ||||    
T  231809 attt 231806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 972521 - 972451
Alignment:
Q  124 taccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttttcgac 194  Q
    ||||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  972521 taccaatacacctaatttataaatctataagttaacgataatttttatgtgataaagagatatttatcgac 972451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 14054819 - 14054721
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||| ||||||| ||| |||| | ||||||| |||||||||||||||||||  |||||||| |||| |||||| ||| ||||||||||||||    
T  14054819 gggagtttctatggtacacccttaaattaaagtgtaccggtacacctatttcataaatcaataagttatcgatcatttttctgtaataaagagatattt 14054721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 32092483 - 32092389
Alignment:
Q  94 gtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||| ||||||| ||| |||| | |||||||||||||||||||| ||||||  |||||||| |||| |||||||||| ||||||||||||||    
T  32092483 gtttctatggtacacccttaaattaaagtgtaccagtacacctattttataaatcaataagttatcgatcatttttatgtaataaagagatattt 32092389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 15264449 - 15264360
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaa 179  Q
    ||||||||||||||||||| ||| |||| || |||| | |||||||||||||||||||  ||||||||| ||| |||||||||| |||||    
T  15264449 gggagtttctacggtacacccttaaattaagatgtatcggtacacctatttcataaatcaataagttaatgattatttttatgtaataaa 15264360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 11489624 - 11489687
Alignment:
Q  125 accagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||| ||||||||||||  |||||||| |||| |||||||||| ||||||||||||||    
T  11489624 accagtacacatatttcataaattaataagttatcgatcatttttatgtaataaagagatattt 11489687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 43167348 - 43167244
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    |||||||||||| |||||| ||| |||| |||| || | |||||||| ||||||||||  ||||||||| ||| || ||||||| | |||||| |||||     
T  43167348 gggagtttctactgtacacccttaaattaaggtatatcggtacacctgtttcataaatcaataagttaaagatcatctttatgtaacaaagagctatttg 43167249  T
Q  190 tcgac 194  Q
    |||||    
T  43167248 tcgac 43167244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 7456208 - 7456306
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||| ||||| |||| |||| ||||||| ||||| || ||||||| ||||  | || |||||||| ||||||||||  ||||||| |||||    
T  7456208 gggagtttctactgtacattcttaaattaaggtgtatcagtatacttatttcacaaatcaacaaattaacgatcatttttatgtagtaaagagctattt 7456306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 8324794 - 8324691
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  8324794 gggagtttctacggtacacccgtcaattaaggtgtaccagtacacctatttcataaatctataagttaacgataatttttatgtgataaagagatattta 8324695  T
Q  190 tcga 193  Q
    ||||    
T  8324694 tcga 8324691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 54911154 - 54911050
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||     
T  54911154 gggagtttctacggtacacccttcaattaaggtgtaccagtacacctattttataaatttataaattaacgataatttttatgtgataaagagatattta 54911055  T
Q  190 tcgac 194  Q
    |||||    
T  54911054 tcgac 54911050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 40284317 - 40284213
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||| ||| |||| |||||||||  ||||| ||||||||||||  ||||||||||||| |||||||||| ||||||| ||||||     
T  40284317 gggagtttctacggtacacccttaaattaaggtgtaccgatacacttatttcataaataaataagttaacgattatttttatgtaataaagaaatatttg 40284218  T
Q  190 tcgac 194  Q
    |||||    
T  40284217 tcgac 40284213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 47244096 - 47243993
Alignment:
Q  85 aatttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||| ||||||||||| ||||||| ||| |||| | |||||||||||||||||||||||||||  |||||||| |||| |||||||||| ||||| ||||    
T  47244096 aattagggagtttctatggtacacccttaaattaaagtgtaccagtacacctatttcataaatcaataagttatcgatcatttttatgtaataaaaagat 47243997  T
Q  185 attt 188  Q
    ||||    
T  47243996 attt 47243993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 52457945 - 52458052
Alignment:
Q  87 tttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatat 186  Q
    ||||||||||||||||||| || ||| |||| ||||||||| ||||||||||||||||| |  |||||||||| || |||||||||| |||||||||| |    
T  52457945 tttgggagtttctacggtatacccttaaattaaggtgtaccggtacacctatttcataattcaataagttaacaatcatttttatgtaataaagagatgt 52458044  T
Q  187 ttttcgac 194  Q
    || |||||    
T  52458045 ttatcgac 52458052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 41574732 - 41574834
Alignment:
Q  85 aatttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||| ||||||||||||| ||||| ||| |||| || |||||||||||||||| |||||||||  ||||||||| ||| |||||||||| ||||||||||    
T  41574732 aattagggagtttctacg-tacacccttaaattaagatgtaccagtacacctaattcataaatcaataagttaatgattatttttatgtaataaagagat 41574830  T
Q  185 attt 188  Q
    ||||    
T  41574831 attt 41574834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 47599944 - 47600047
Alignment:
Q  85 aatttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||| ||||||||||| ||||||| ||| |||| | ||||||||||||| |||||||||||||  |||||||| |||| |||||||| | ||||||||||    
T  47599944 aattagggagtttctatggtacacccttaaattaaagtgtaccagtacatctatttcataaatcaataagttatcgatcatttttatataataaagagat 47600043  T
Q  185 attt 188  Q
    ||||    
T  47600044 attt 47600047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 43744231 - 43744323
Alignment:
Q  96 ttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||| ||| |||| | |||||| ||||||||||||| ||||||  |||||||| |||| |||||||||| ||||||||||||||    
T  43744231 ttctacggtacacccttaaattaaagtgtacaagtacacctattttataaatcaataagttatcgatcatttttatgtaataaagagatattt 43744323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 52178953 - 52179057
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||| ||| |||| ||||||||| |||||  | ||||||||||  ||||||||||||| |||||||||| | |||||| |||||     
T  52178953 gggagtttctacggtacacccttaaattaaggtgtaccggtacatttgtttcataaatcaataagttaacgatcatttttatgtaaaaaagagctattta 52179052  T
Q  190 tcgac 194  Q
    |||||    
T  52179053 tcgac 52179057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 54831229 - 54831131
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||| | ||||| ||| |||| | ||||||| |||||||||||||||||||  |||||||| |||| |||||| ||| ||||||||||||||    
T  54831229 gggagtttctatgatacacccttaaattaaagtgtaccggtacacctatttcataaatcaataagttatcgatcatttttctgtaataaagagatattt 54831131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 19608698 - 19608593
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||||||| |||  || |||| |||||||||  ||||||| ||||||||||  ||||||||||||| |||||||||| | |||||| |||||    
T  19608698 tgggagtttctacggttcaccattaaattaaggtgtaccgatacacctgtttcataaatcaataagttaacgatcatttttatgtaaaaaagagctattt 19608599  T
Q  189 ttcgac 194  Q
     |||||    
T  19608598 gtcgac 19608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 41902355 - 41902251
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||  ||| |||| ||||||| | |||||||| ||||||||||  ||||| ||||||| |||||||||| | |||||| |||||     
T  41902355 gggagtttctacggtacatccttaaattaaggtgtatcggtacacctgtttcataaattaataagctaacgatcatttttatgtaaaaaagagctatttg 41902256  T
Q  190 tcgac 194  Q
    |||||    
T  41902255 tcgac 41902251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 46948616 - 46948719
Alignment:
Q  85 aatttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||| |||||||||||| |||||  ||| | || || |||||  |||||||||||||||||||  ||||||||| ||| |||||||||| ||||||||||    
T  46948616 aattagggagtttctactgtacatccttaatttaagatgtactggtacacctatttcataaatcaataagttaatgattatttttatgtaataaagagat 46948715  T
Q  185 attt 188  Q
    ||||    
T  46948716 attt 46948719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 25558718 - 25558658
Alignment:
Q  128 agtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||||||||  |||||||| |||| |||||||||| ||||||||||||||    
T  25558718 agtacacctatttcataaattaataagttatcgatcatttttatgtaataaagagatattt 25558658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 32621745 - 32621641
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    |||||||||||||||| || ||| |||| |||||||   |||||||||||||||||||  ||||| ||| ||| |||||||||  | |||||| |||||     
T  32621745 gggagtttctacggtatacccttaaattaaggtgtattggtacacctatttcataaatcaataagataaagatcatttttatgaaacaaagagctatttg 32621646  T
Q  190 tcgac 194  Q
    |||||    
T  32621645 tcgac 32621641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 542730 - 542672
Alignment:
Q  130 tacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||| ||||||||||||  |||||||| |||| |||||||||| ||||||||||||||    
T  542730 tacacttatttcataaatcaataagttatcgatcatttttatgtaataaagagatattt 542672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 53444950 - 53444844
Alignment:
Q  88 ttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatt 187  Q
    ||||||||||||||||||||  ||| |||| ||||||||| |||||||| |||  | |||  |||| |||||||| |||| ||||| | |||||| ||||    
T  53444950 ttgggagtttctacggtacatccttaaattaaggtgtaccggtacacctgttttgtgaattaataatttaacgatcatttatatgtaacaaagagctatt 53444851  T
Q  188 tttcgac 194  Q
    | |||||    
T  53444850 tgtcgac 53444844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 13451465 - 13451518
Alignment:
Q  135 ctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||||  |||||||| |||| |||||||||| ||||||||||||||    
T  13451465 ctatttcataaatcaataagttatcgatcatttttatgtaataaagagatattt 13451518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 4817074 - 4817174
Alignment:
Q  88 ttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatt 187  Q
    |||||| ||||||||||||||||   || | ||||||||| |||| | || || |||| | ||||| |||||||| |||||||||| ||||| || ||||    
T  4817074 ttgggaatttctacggtacactcacaaaatgaggtgtaccggtactcttactttataattttataaattaacgatcatttttatgtaataaatagttatt 4817173  T
Q  188 t 188  Q
    |    
T  4817174 t 4817174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 6e-39; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 3911629 - 3911528
Alignment:
Q  93 agtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttttcg 192  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||    
T  3911629 agtttctacggtacacccttcaattaaggtgtaccagtacacctatttcataaatctataagttaacgataatttttacgtgataaagagatatttatcg 3911530  T
Q  193 ac 194  Q
    ||    
T  3911529 ac 3911528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 13119223 - 13119119
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||     
T  13119223 gggagtttctacggtacatccttcaattaaggtgtaccagtacacctatttcataaatatataagttaaagataatttttatgtgataaagagatattta 13119124  T
Q  190 tcgac 194  Q
    |||||    
T  13119123 tcgac 13119119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 36023992 - 36023889
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||     
T  36023992 gggagtttctacggtacacccttcaattaaggtgtaccagtacacctatttcataaatcta-aagttaacgataatttttatgtgataaagagatattta 36023894  T
Q  190 tcgac 194  Q
    |||||    
T  36023893 tcgac 36023889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 36430612 - 36430716
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||     
T  36430612 gggagtttctacggtacacccttcaattaaggtgtaccggtacacctatttcataaatttataaggtaaagataatttttatgtgataaagagatattta 36430711  T
Q  190 tcgac 194  Q
    |||||    
T  36430712 tcgac 36430716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 325849 - 325751
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||||||| ||||| || ||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  325849 gggagtttctacggtacacccttcagttaaggagtaccagtacacttatttcataaatatataagttaacgataatttttatgtgataaagagatattt 325751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 39307417 - 39307313
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||| | ||||||     
T  39307417 gggagtttctacggtacacccttcaattaaggtgtaccagtacacatatttcataaaaccataagttaacgataatttttatgtgataaataaatattta 39307318  T
Q  190 tcgac 194  Q
    |||||    
T  39307317 tcgac 39307313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 44544452 - 44544348
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    |||| |||||||| ||||  |||||||| ||||||| |||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||     
T  44544452 gggaatttctacgatacatccttcaattaaggtgtatcagtacacctattttataaatctataagttaacgataattttaatgtgataaagagatattta 44544353  T
Q  190 tcgac 194  Q
    |||||    
T  44544352 tcgac 44544348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 29943962 - 29943867
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||| |  |||||||||| || |||||||||| ||||||||||    
T  29943962 tgggagtttctacggtacacccttaaattaaggtgtaccggtacacctatttcataattcaataagttaacaatcatttttatgtaataaagagat 29943867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 13507244 - 13507358
Alignment:
Q  80 ataagaatttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaa 179  Q
    |||| |||| ||||||||| ||||||||  ||| |||| ||||||||   ||||||||||||||||||  ||||||||| ||| |||||||||| |||||    
T  13507244 ataataattagggagtttcgacggtacatccttaaattaaggtgtactgatacacctatttcataaatcaataagttaatgatcatttttatgtaataaa 13507343  T
Q  180 gagatatttttcgac 194  Q
    ||||||||| |||||    
T  13507344 gagatatttatcgac 13507358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 22595147 - 22595038
Alignment:
Q  85 aatttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    ||||| |||||||||||||||||| ||| |||| ||||||||| ||||| || ||||||||||  ||||||||||||| |||||||||| | ||| || |    
T  22595147 aatttaggagtttctacggtacacccttaaattaaggtgtaccggtacatctgtttcataaatcaataagttaacgatcatttttatgtaaaaaaaagct 22595048  T
Q  185 atttttcgac 194  Q
    |||| |||||    
T  22595047 atttgtcgac 22595038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 15354835 - 15354749
Alignment:
Q  93 agtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaa 179  Q
    |||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||  |||| ||||| || |||||||||| |||||    
T  15354835 agtttctacggtacacccttaaattaaggtgtaccagtacacctgtttcataaatcaataaattaactatcatttttatgtaataaa 15354749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 36054351 - 36054253
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||| ||||||  ||| |||| | ||||| |||||||||||||||||||||  |||||||| | || |||||||||| ||||||||||||||    
T  36054351 gggagtttctatggtacatccttaaattaaagtgtatcagtacacctatttcataaatcaataagttatcaatcatttttatgtaataaagagatattt 36054253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 2640323 - 2640225
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||  ||||||  ||| |||| | |||||||||||||||||||||||||||  |||||||| |||| |||||||||| ||||| | ||||||    
T  2640323 gggagtttctttggtacatccttaaattaaagtgtaccagtacacctatttcataaatcaataagttatcgatcatttttatgtaataaataaatattt 2640225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 6279535 - 6279633
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||| | ||||| ||| |||| | ||||| ||||||| |||||||||||||  ||||||||  ||| |||||||||| ||||||||||||||    
T  6279535 gggagtttctatgatacacccttaaattaaagtgtatcagtacatctatttcataaatcaataagttattgatcatttttatgtaataaagagatattt 6279633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 41515831 - 41515931
Alignment:
Q  88 ttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatt 187  Q
    |||| ||||| || ||||||  ||| |||| | |||||||||||||||||||| ||||||  |||||||| |||| ||||||| || |||||||||||||    
T  41515831 ttggtagtttgtatggtacatccttaaattaaagtgtaccagtacacctattttataaatcaataagttatcgatcatttttaagtaataaagagatatt 41515930  T
Q  188 t 188  Q
    |    
T  41515931 t 41515931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 5155693 - 5155792
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||| ||||||||||  || |||| || |||| | |||||  ||||||||||||  ||| ||||| ||| |||||||||| ||||||||||||||    
T  5155693 tgggagtttttacggtacacctttaaattaagatgtatcggtacatttatttcataaatcaatacgttaatgattatttttatgtaataaagagatattt 5155792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 86 - 194
Target Start/End: Original strand, 968495 - 968603
Alignment:
Q  86 atttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagata 185  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| |||||    
T  968495 atttgggagtttctacggtacacccttcaattaaggtgtaccagtacacatatttcataaatctacaagttaacgataatttttatgtgataaacagata 968594  T
Q  186 tttttcgac 194  Q
    ||| |||||    
T  968595 tttatcgac 968603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 20884030 - 20883926
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||     
T  20884030 gggagtttctacggtacacccttcaattaaggtgtaccagtacacctattttataaatctataagttaacgataacttttatgtgataaagagatattta 20883931  T
Q  190 tcgac 194  Q
    |||||    
T  20883930 tcgac 20883926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 24189051 - 24189155
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||| |||||||  ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  24189051 gggagtttctaaggtacacctttcaattaaggtgtaccagtacacctatttcataaatctataagttaacgataatttttatgtgataaagagatattta 24189150  T
Q  190 tcgac 194  Q
    |||||    
T  24189151 tcgac 24189155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 38034722 - 38034827
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| | ||||||    
T  38034722 tgggagtttctatggtacacccttcaattaaggtgtaccagtacacatatttcataaatctataagttaacaataatttttatgtgataaacaaatattt 38034821  T
Q  189 ttcgac 194  Q
     |||||    
T  38034822 atcgac 38034827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 45704501 - 45704595
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    ||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||| |  |||||||||| || |||||||||| ||||||||||    
T  45704501 gggagtttctacggtacacccttaaattaaggtgtaccggtacacctatttcataattcaataagttaacaatcatttttatgtaataaagagat 45704595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 24203273 - 24203175
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||||||| ||| |||| || |||||  |||||||||||||||||||  |||| |||| ||| |||||||||| ||||||||||||||    
T  24203273 gggagtttctacggtacacccttaaattaagatgtactggtacacctatttcataaatcaataaattaatgattatttttatgtaataaagagatattt 24203175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 39925795 - 39925889
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    ||||||||||||||||||  ||| |||| ||||||||| ||||||||||||||||| |  |||||||||| || |||||||||| ||||||||||    
T  39925795 gggagtttctacggtacatccttaaattaaggtgtaccggtacacctatttcataattcaataagttaacaatcatttttatgtaataaagagat 39925889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 31603639 - 31603563
Alignment:
Q  92 gagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataattttt 169  Q
    ||||||||||||||||| |||||||| ||||||||||||||| |||||| |||||| |||||||||| ||||||||||    
T  31603639 gagtttctacggtacacccttcaattaaggtgtaccagtaca-ctattttataaatctataagttaaagataattttt 31603563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 37118337 - 37118438
Alignment:
Q  93 agtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttttcg 192  Q
    |||||||||||||||  | | |||| |||||||||  ||||||||||||||||||  |||| |||||||| |||||||||| ||||||| |||||| |||    
T  37118337 agtttctacggtacatccataaattaaggtgtaccgatacacctatttcataaatcaataaattaacgatcatttttatgtaataaagaaatatttatcg 37118436  T
Q  193 ac 194  Q
    ||    
T  37118437 ac 37118438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 15877469 - 15877382
Alignment:
Q  101 cggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||| ||| |||| ||||||||| |||||||| ||||||||||  ||||||||||||| |||||||||| | |||||| |||||    
T  15877469 cggtacacccttaaattaaggtgtaccggtacacctgtttcataaattaataagttaacgatcatttttatgtaaaaaagagctattt 15877382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 48900512 - 48900610
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||||||  ||| | || || ||||||  ||||||||||||||||||  |||||| || ||| |||||||||| ||||||||||||||    
T  48900512 gggagtttctacggtacatccttaatttaagatgtaccgatacacctatttcataaatcaataagtaaatgattatttttatgtaataaagagatattt 48900610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 19503119 - 19503200
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataattttta 170  Q
    |||||||||||| ||||||||||| |||| || |||||| |||||||| ||||||||||  | ||||||||||| |||||||    
T  19503119 tgggagtttctatggtacactcttaaattaagatgtaccggtacacctgtttcataaatcaaaaagttaacgatcattttta 19503200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 29273388 - 29273284
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    ||||||||||||||||||| ||| |||| ||||||| | |||||||| |||| | |||  |||| |||||||| |||||||||| | |||||| |||||     
T  29273388 gggagtttctacggtacacccttaaattaaggtgtatcggtacacctgtttcgtgaattaataatttaacgatcatttttatgtaacaaagagctatttg 29273289  T
Q  190 tcgac 194  Q
    |||||    
T  29273288 tcgac 29273284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 184
Target Start/End: Original strand, 37001001 - 37001093
Alignment:
Q  92 gagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||||||||||||||||  || |||| ||||||| | ||||||||||||||||| |  |||| ||||| || |||||||||| ||||||||||    
T  37001001 gagtttctacggtacacctttaaattaaggtgtatcggtacacctatttcataattcaataaattaacaatcatttttatgtaataaagagat 37001093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 30819823 - 30819757
Alignment:
Q  122 tgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||| ||||| |||||||||||||  ||||||||| ||| |||||||||| ||||||||||||||    
T  30819823 tgtaccggtacatctatttcataaatcaataagttaatgattatttttatgtaataaagagatattt 30819757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 46879894 - 46879975
Alignment:
Q  114 aattcaggtgtaccagtacacctatttcataaatgtataa-gttaacgataatttttatgtgataaagagatatttttcgac 194  Q
    |||| ||||||||| |||||| ||||||||||||  |||| ||||||||| |||||||||| ||||||| |||||| |||||    
T  46879894 aattaaggtgtaccggtacacttatttcataaatcaataaggttaacgattatttttatgtaataaagatatatttgtcgac 46879975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 29982057 - 29982161
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttt 189  Q
    |||| |||||||||||||  ||| |||| | ||||||||||||||||||||| | |||  |||| ||||| || |||||||||| | |||||| |||||     
T  29982057 gggaatttctacggtacatccttaaattaatgtgtaccagtacacctatttcgtgaattaataatttaacaatcatttttatgtaacaaagagctatttg 29982156  T
Q  190 tcgac 194  Q
    |||||    
T  29982157 tcgac 29982161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 27276144 - 27276085
Alignment:
Q  129 gtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||||||||||  |||||||| |||| |||||| ||| ||||||||||||||    
T  27276144 gtacacctatttcataaatcaataagttatcgatcatttttctgtaataaagagatattt 27276085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 35567074 - 35567015
Alignment:
Q  129 gtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||| || ||||||||||| |||||| |||||| |||||||||| |||||||| |||||    
T  35567074 gtacatctgtttcataaatgaataagtaaacgatcatttttatgtaataaagagttattt 35567015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 13806762 - 13806688
Alignment:
Q  95 tttctacggtacact-cttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttt 168  Q
    ||||||||||||||| | | |||| |||||||||||||| |||| |||| |||| ||||| |||||||| |||||    
T  13806762 tttctacggtacacttcataaattgaggtgtaccagtactcctacttcaaaaatttataatttaacgattatttt 13806688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 70693 - 70798
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||  |||||||    
T  70693 tgggagtttctacggtacacccttcaattaaggtgtatcagtacacctatttcataaatctataagttaactataatttttatgtgataaacggatattt 70792  T
Q  189 ttcgac 194  Q
     |||||    
T  70793 atcgac 70798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 262824 - 262929
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    |||||||||||||||||||| |||||||| ||||||| | ||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  262824 tgggagtttctacggtacacccttcaattaaggtgtatcggtacacctatttcataaatctataaggtaaagataatttttatgtgataaagagatattt 262923  T
Q  189 ttcgac 194  Q
     |||||    
T  262924 atcgac 262929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 5700 - 5802
Alignment:
Q  92 gagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttttc 191  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||  ||||||| ||    
T  5700 gagtttctacggtacatccttcaattaaggtgtaccagtacacctattttataaatctataagttaaagataatttttatgtgataaactgatatttatc 5799  T
Q  192 gac 194  Q
    |||    
T  5800 gac 5802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 3e-25; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 32716009 - 32715915
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |  |||||||||| || |||||||||| ||||||||||    
T  32716009 gggagtttctacggtacacccttaaattaaggtgtaccagtacacctatttcataattcaataagttaacaatcatttttatgtaataaagagat 32715915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 22735108 - 22735010
Alignment:
Q  90 gggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||| ||||||| ||| |||| | ||||||||||| |||||||||||||||  |||||||| |||| |||||||||| ||||||||||||||    
T  22735108 gggagtttctatggtacacccttaaattaaagtgtaccagtatacctatttcataaatcaataagttatcgatcatttttatgtaataaagagatattt 22735010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 26611872 - 26611770
Alignment:
Q  92 gagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatatttttc 191  Q
    |||||| ||||||| ||| || |||| ||||||| | |||||||| |||||||||| || |||||||||||||||||||||| |||||||||||||| ||    
T  26611872 gagtttttacggtatacttttaaattaaggtgtatcggtacacctgtttcataaatttacaagttaacgataatttttatgtaataaagagatatttatc 26611773  T
Q  192 gac 194  Q
    |||    
T  26611772 gac 26611770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 5078558 - 5078455
Alignment:
Q  85 aatttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||| ||||||||||| ||||||| ||| |||| | ||||||| |||||||||||||||||||  |||||||| |||| |||||| ||| ||||||||||    
T  5078558 aattagggagtttctatggtacacccttaaattaaagtgtaccggtacacctatttcataaataaataagttatcgatcatttttctgtaataaagagat 5078459  T
Q  185 attt 188  Q
    ||||    
T  5078458 attt 5078455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 10091890 - 10091795
Alignment:
Q  93 agtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||||  || ||||  |||||||| |||||||||||||||||||  |||| ||||||||||||||||||| |||||| |||||||    
T  10091890 agtttctacggtacacctttaaattatggtgtaccggtacacctatttcataaatcaataaattaacgataatttttatgtaataaagtgatattt 10091795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 2198189 - 2198084
Alignment:
Q  89 tgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||| ||||||  || |||| ||||||||| ||||| |||||||||||||  ||||||||| ||| |||||||||| | |||||| |||||    
T  2198189 tgggagtttctactgtacacctttaaattaaggtgtaccggtacatctatttcataaatcaataagttaaagatcatttttatgtaacaaagagctattt 2198090  T
Q  189 ttcgac 194  Q
     |||||    
T  2198089 atcgac 2198084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 3448096 - 3448199
Alignment:
Q  85 aatttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagat 184  Q
    |||| ||||||||||| | ||||| ||| |||| | ||||| | |||||||||||||||||||  |||||||| |||| |||||| ||| ||||||| ||    
T  3448096 aattagggagtttctatgatacacccttaaattaaagtgtaacggtacacctatttcataaatcaataagttatcgatcatttttctgtaataaagaaat 3448195  T
Q  185 attt 188  Q
    ||||    
T  3448196 attt 3448199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 33610700 - 33610796
Alignment:
Q  88 ttgggagtttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagata 185  Q
    |||||||||| |||||||||| ||| || | || |||||| |||||||||||| ||||||  ||| ||||| ||| |||||||||| |||||||||||    
T  33610700 ttgggagttt-tacggtacacccttaaactaagatgtaccggtacacctattttataaatcaatatgttaatgattatttttatgtaataaagagata 33610796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 31394553 - 31394497
Alignment:
Q  132 cacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||||  |||||||| |||| ||||| |||| ||||||||||||||    
T  31394553 cacctatttcataaatcaataagttatcgatcattttaatgtaataaagagatattt 31394497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 18667693 - 18667785
Alignment:
Q  96 ttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatgtgataaagagatattt 188  Q
    ||||||||||||||| | ||||  |||||||| |||| | || ||| ||||| ||||| |||||||| | ||||||| |||||| || |||||    
T  18667693 ttctacggtacactcgtaaattgtggtgtaccggtactcttaattcctaaatctataaattaacgatcaattttatgagataaatagttattt 18667785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 21970707 - 21970631
Alignment:
Q  96 ttctacggtacactcttcaattcaggtgtaccagtacacctatttcataaatgtataagttaacgataatttttatg 172  Q
    ||||||||||||||| | ||||| |||||||| |||| | || ||| ||||| ||||| |||||||| | |||||||    
T  21970707 ttctacggtacactcataaattctggtgtaccggtactcttacttcctaaatctataaattaacgatcaattttatg 21970631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University