View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_289 (Length: 204)
Name: NF10151A_low_289
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_289 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 11227545 - 11227380
Alignment:
| Q |
22 |
aaacaggtcaatatataaggaaaatagtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcaca |
121 |
Q |
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| T |
11227545 |
aaacaggtcaatatataagaaaaatagtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcaca |
11227446 |
T |
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| Q |
122 |
aaatgttcatataattaaattactctaacataaaattagcatcttcatcactacagttattatgat |
187 |
Q |
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| T |
11227445 |
aaatgttcatataattaaactactctaacatgaaattagcatcttcatcactacagttattatgat |
11227380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 10128203 - 10128093
Alignment:
| Q |
32 |
atatataaggaaaatagtacaaagttcataaaccttaattgagttgaaaagaacaata--aactatgacttatagcttattagaaaagcacaaaatgttc |
129 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||| || |||| | | ||||| || ||||||||| ||||| |||| ||||||| |
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| T |
10128203 |
atatataagaaaaatagtacaaagttcataaacattaattgagttgaagagtacaaaaagagctatgtctgatagcttatatgaaaaacacataatgttc |
10128104 |
T |
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| Q |
130 |
atataattaaa |
140 |
Q |
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| T |
10128103 |
atataattaaa |
10128093 |
T |
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