View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_290 (Length: 203)

Name: NF10151A_low_290
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_290
NF10151A_low_290
[»] chr4 (2 HSPs)
chr4 (76-203)||(55385154-55385281)
chr4 (6-81)||(55384981-55385056)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 55385281 - 55385154
Alignment:
Q  76 gtattgtatattttcttacaaatagaagtataataattgcaaacattttcttgagccagtttagctggttgcatttccttctgacttcaccttgcatagt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |    
T  55385281 gtattgtatattttcttacaaatagaagtataataattgcaaacattttcttgagctagtttagctggttgcatttccttctgacttcaccttgaatatt 55385182  T
Q  176 tgtgagaacattgctagcagaaagctta 203  Q
    ||||||||||||||||||||||||||||    
T  55385181 tgtgagaacattgctagcagaaagctta 55385154  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 55384981 - 55385056
Alignment:
Q  6 aatgacatgaccccaacaatatttgacaatcaatattaccgagacattatgatgggaagaggtttgcttggtattg 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55384981 aatgacatgaccccaacaatatttgacaatcaatattaccgagacattatgatgggaagaggtttgcttggtattg 55385056  T

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