View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_30 (Length: 405)

Name: NF10151A_low_30
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_30
NF10151A_low_30
[»] chr4 (7 HSPs)
chr4 (21-405)||(4122924-4123308)
chr4 (289-405)||(4362452-4362567)
chr4 (299-397)||(4346265-4346363)
chr4 (289-397)||(4336802-4336909)
chr4 (78-259)||(4336581-4336751)
chr4 (301-405)||(4319582-4319686)
chr4 (115-169)||(3746505-3746561)
[»] chr7 (2 HSPs)
chr7 (97-159)||(2087329-2087391)
chr7 (91-175)||(36424650-36424734)
[»] chr3 (1 HSPs)
chr3 (117-192)||(9233233-9233308)
[»] chr2 (1 HSPs)
chr2 (87-157)||(31062194-31062264)
[»] chr5 (4 HSPs)
chr5 (112-178)||(7566378-7566446)
chr5 (128-170)||(12045575-12045617)
chr5 (102-169)||(26683695-26683764)
chr5 (117-175)||(10515804-10515864)
[»] chr8 (1 HSPs)
chr8 (126-190)||(10659451-10659515)
[»] chr1 (1 HSPs)
chr1 (103-175)||(31659661-31659732)


Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 21 - 405
Target Start/End: Complemental strand, 4123308 - 4122924
Alignment:
Q  21 aaataattttaatttttaggaaaatgtttggtagacacctaaacaccttaagcgagagagacagagagaaataacaagagtgatgtgataaatttgatat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4123308 aaataattttaatttttaggaaaatgtttggtagacacctaaacaccttaagcgagagagacagagagaaataacaagagtgatgtgatagatttgatat 4123209  T
Q  121 gttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggtgtccaactaacattgttttaatttttactg 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  4123208 gttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggtgtccaaatatcattgttttaatttttactg 4123109  T
Q  221 atcaaaatacgaataattatcttatgaggagtattatatcattgttaaatgattgtgatattagtatttatttccacttttttacagaatttgactgtcg 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4123108 atcaaaatacgaataattatcttatgaggagtattatatcattgttaaatgattgtgatattagtgtttatttccacttttttacagaatttgactgtcg 4123009  T
Q  321 atgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagtttttga 405  Q
    | ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4123008 acgggggtggtagtgttttgctcccctgtgataattacccaaattggttaagtttcaactccaaaggttattctgttgtttttga 4122924  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 289 - 405
Target Start/End: Original strand, 4362452 - 4362567
Alignment:
Q  289 tatttccacttttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggt 388  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||| ||| |||||||||||||||||||||| ||||||||    
T  4362452 tatttccactttt-tacagaatttgactgtcgatgggcgtggtagttttttgctccctggtgatgattacccaaattggttaagtttcaacgccaaaggt 4362550  T
Q  389 tattctgtagtttttga 405  Q
    ||||||||| |||||||    
T  4362551 tattctgtaatttttga 4362567  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 299 - 397
Target Start/End: Original strand, 4346265 - 4346363
Alignment:
Q  299 tttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgta 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||||    
T  4346265 tttttacagaatttgactgtcgatgggcgtggtagttttttgctccccggtgataattacccaaattggtcaactttcaactccaaaggttattctgta 4346363  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 289 - 397
Target Start/End: Original strand, 4336802 - 4336909
Alignment:
Q  289 tatttccacttttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggt 388  Q
    |||||||||||| | ||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||| |||||||||||||  ||||||||| ||||||    
T  4336802 tatttccactttct-acagaatgtgactgtcgatgggtgtggtagctttttgctccccagtgatgattacccaaattggttagctttcaactcgaaaggt 4336900  T
Q  389 tattctgta 397  Q
    |||||||||    
T  4336901 tattctgta 4336909  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 4336581 - 4336751
Alignment:
Q  78 gagacagagagaaataacaagagtgatgtgataaatttgatatgttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgttt 177  Q
    |||| ||| |||||||  |||||| | |||||| |||||||| |||| ||||||||||||||||||||        || ||| | | | ||||| |||||    
T  4336581 gagagagaaagaaatagaaagagtaacgtgatagatttgataagttgatgatgtgataggaagagaga--------aattgaggagctgaatgattgttt 4336672  T
Q  178 ggaaaattggggtgtccaactaacattgttttaatttttactgatcaaaatacgaataattatcttatgaggagtattatat 259  Q
     |||||||||||||||||| || ||||||| ||||||||| | ||||||||||   |||||||||| |||||| | ||||||    
T  4336673 cgaaaattggggtgtccaaatatcattgttgtaatttttatttatcaaaatac---taattatcttttgaggaatgttatat 4336751  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 405
Target Start/End: Complemental strand, 4319686 - 4319582
Alignment:
Q  301 tttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagtt 400  Q
    |||||||||||||||| |||||| || |||| ||||||  ||||| |||||||||| |||  ||||||||  |||||| ||  |||||| ||||||| ||    
T  4319686 tttacagaatttgactatcgatgagcatggtcgtttttcactcccttgtgataattacccggattggttagctttcaattcagaaggttcttctgtaatt 4319587  T
Q  401 tttga 405  Q
    |||||    
T  4319586 tttga 4319582  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 3746561 - 3746505
Alignment:
Q  115 tgatatgttggtgatgtgataggaaga--gagataaagagaaaatgaagtgttaaat 169  Q
    ||||| ||||||||| ||||| |||||  |||||| |||||||||||||||||||||    
T  3746561 tgataggttggtgatatgataagaagatagagatagagagaaaatgaagtgttaaat 3746505  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 2087391 - 2087329
Alignment:
Q  97 agagtgatgtgataaatttgatatgttggtgatgtgataggaagagagataaagagaaaatga 159  Q
    ||||| ||||||||||| |||||| ||| | ||||||||||||||||||||||||||||||||    
T  2087391 agagtaatgtgataaatgtgatatattgttaatgtgataggaagagagataaagagaaaatga 2087329  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 36424650 - 36424734
Alignment:
Q  91 ataacaagagtgatgtgataaatttgatatgttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgt 175  Q
    ||||||| ||||||||| |  || |||| ||| | || ||||||||||||||| ||||||||||||| || |||||||| |||||    
T  36424650 ataacaaaagtgatgtgtttgatatgatgtgtagttggtgtgataggaagagaaataaagagaaaataaaatgttaaataagtgt 36424734  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 9233308 - 9233233
Alignment:
Q  117 atatgttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggtgt 192  Q
    |||||||| |||||||||| |||||||||| |||| ||||||||||||| ||||||||| || ||| || ||||||    
T  9233308 atatgttgatgatgtgataagaagagagatgaagataaaatgaagtgttgaatgagtgtatgtaaagttagggtgt 9233233  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 31062264 - 31062194
Alignment:
Q  87 agaaataacaagagtgatgtgataaatttgatatgttggtgatgtgataggaagagagataaagagaaaat 157  Q
    ||||| || |||| ||||||||||||| |||||| ||||||||||||||| |||||||||| | |||||||    
T  31062264 agaaacaaaaagaatgatgtgataaatatgatattttggtgatgtgatagaaagagagatacatagaaaat 31062194  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 7566378 - 7566446
Alignment:
Q  112 atttgatatgttggtgatgtgataggaagagaga--taaagagaaaatgaagtgttaaatgagtgtttg 178  Q
    |||||||| |||| |||| |||||||||||||||  || ||||||||||||||||||||| | ||||||    
T  7566378 atttgataggttgatgatatgataggaagagagagatagagagaaaatgaagtgttaaataaatgtttg 7566446  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 12045575 - 12045617
Alignment:
Q  128 atgtgataggaagagagataaagagaaaatgaagtgttaaatg 170  Q
    |||||||||||||||||||| |||||||||||| |||| ||||    
T  12045575 atgtgataggaagagagatatagagaaaatgaattgttgaatg 12045617  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 26683695 - 26683764
Alignment:
Q  102 gatgtgataaatttgatatgttggtgatgtgatagga--agagagataaagagaaaatgaagtgttaaat 169  Q
    |||||||||||| | |||| || ||||||||||||||  | ||||||| |||||||||||||| ||||||    
T  26683695 gatgtgataaatcttatatattagtgatgtgataggagtaaagagatatagagaaaatgaagtattaaat 26683764  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 10515804 - 10515864
Alignment:
Q  117 atatgttggtgatgtgataggaagaga--gataaagagaaaatgaagtgttaaatgagtgt 175  Q
    |||| ||| ||||||||||||||||||  ||||||||||||||||| |||| || ||||||    
T  10515804 atatattgatgatgtgataggaagagatagataaagagaaaatgaaatgttgaacgagtgt 10515864  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 10659515 - 10659451
Alignment:
Q  126 tgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggt 190  Q
    |||||| |||| || |||||||||||  |||||| ||||| ||||| |||| |||||||||||||    
T  10659515 tgatgtaatagaaaaagagataaagattaaatgatgtgttgaatgaatgttaggaaaattggggt 10659451  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 31659732 - 31659661
Alignment:
Q  103 atgtgataaatttgatatgttggtgatgtgataggaagagagataaagagaaaatgaagtgttaaatgagtgt 175  Q
    ||||||||||| |||||| |||||||| | ||| ||| ||||||| | ||||||||||||||| ||| |||||    
T  31659732 atgtgataaatatgatatattggtgatataataagaa-agagatatacagaaaatgaagtgtttaataagtgt 31659661  T

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