View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_36 (Length: 399)
Name: NF10151A_low_36
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 8227691 - 8227488
Alignment:
| Q |
15 |
atcacctacattcaaaacggaagattttctcaaaaactaccatctcgtttgagaatttatgaatctaactatagagcaattcttagaacttaggatacaa |
114 |
Q |
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| T |
8227691 |
atcacctacattcaaaacggaagattttctcaaaaactaccatctcgtttgagaatttatgaatctaactatagagcaattcttagaacttaggatacaa |
8227592 |
T |
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| Q |
115 |
attatacaatacctgatcgtacatgcttactcacatgtacatgcttaaatatgtaatcaaacaattgaatccttcttctcaaaacaaaacagaaacgttt |
214 |
Q |
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| T |
8227591 |
attatacaatacctgatcgtacatgcttactcacatgtacatgcttaaatatgtaatcaaacaattgaatccttcttctcaaaacaaaacagaaacgttt |
8227492 |
T |
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| Q |
215 |
caca |
218 |
Q |
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|||| |
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| T |
8227491 |
caca |
8227488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 233 - 385
Target Start/End: Complemental strand, 8227452 - 8227321
Alignment:
| Q |
233 |
cataaacaaatgccactcttatttacctaaacagaaaagggattaaaagagtaatgtttttccaatactcaagtcatatataatgcaagacaaaatggct |
332 |
Q |
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| T |
8227452 |
cataaacaaatgccactcttatttacctaaacagaaaagggattaaaagagtaatgtttttccaatactcaagtcatata-------------------- |
8227373 |
T |
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| Q |
333 |
tccacattttcaagcattggcaacccaacatggcttgtgctcaattattatta |
385 |
Q |
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| T |
8227372 |
-ctacattttcaagcattggcaacccaacatggcttgtgctcaattattatta |
8227321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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