View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_38 (Length: 393)

Name: NF10151A_low_38
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_38
NF10151A_low_38
[»] chr8 (5 HSPs)
chr8 (184-352)||(556683-556851)
chr8 (41-187)||(556467-556628)
chr8 (222-352)||(22573077-22573207)
chr8 (222-352)||(31734258-31734388)
chr8 (299-352)||(11066502-11066555)
[»] chr1 (11 HSPs)
chr1 (225-352)||(26793702-26793829)
chr1 (222-352)||(19806799-19806931)
chr1 (225-352)||(4076389-4076516)
chr1 (239-352)||(50004939-50005052)
chr1 (225-352)||(4950136-4950263)
chr1 (238-352)||(9383270-9383384)
chr1 (299-352)||(6768281-6768334)
chr1 (269-345)||(28883929-28884005)
chr1 (223-347)||(30209689-30209813)
chr1 (305-352)||(614929-614976)
chr1 (222-259)||(12855371-12855408)
[»] chr4 (6 HSPs)
chr4 (259-352)||(44125983-44126076)
chr4 (223-351)||(19181457-19181585)
chr4 (223-342)||(45413823-45413942)
chr4 (287-352)||(2183302-2183367)
chr4 (287-352)||(36625579-36625644)
chr4 (279-344)||(55945703-55945768)
[»] chr2 (6 HSPs)
chr2 (231-351)||(40626420-40626540)
chr2 (225-352)||(6457543-6457670)
chr2 (288-343)||(7670385-7670440)
chr2 (287-342)||(40054516-40054571)
chr2 (282-343)||(5256379-5256440)
chr2 (308-352)||(6452491-6452535)
[»] chr5 (3 HSPs)
chr5 (224-351)||(32529420-32529549)
chr5 (226-342)||(34731215-34731331)
chr5 (301-352)||(13109730-13109781)
[»] chr6 (2 HSPs)
chr6 (231-352)||(8573831-8573952)
chr6 (231-352)||(8547478-8547599)
[»] chr3 (4 HSPs)
chr3 (232-341)||(40416900-40417009)
chr3 (82-150)||(46713885-46713953)
chr3 (310-352)||(38457767-38457809)
chr3 (287-352)||(51976195-51976260)
[»] chr7 (7 HSPs)
chr7 (223-352)||(2334029-2334161)
chr7 (222-352)||(41482463-41482593)
chr7 (224-351)||(5784255-5784382)
chr7 (269-352)||(24429679-24429762)
chr7 (287-333)||(41147920-41147966)
chr7 (235-352)||(23318981-23319098)
chr7 (244-352)||(39594599-39594707)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 184 - 352
Target Start/End: Original strand, 556683 - 556851
Alignment:
Q  184 tagaaataaaacaatgagcaatcagtcataacattggtcccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatc 283  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  556683 tagaaataaaacaatgagaaatcagtcataacattgggcccgtttgatgcacatgataaggagataggatatgataaaccaatcatatcctgatccaaac 556782  T
Q  284 cgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 352  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  556783 cgctgtttcgtgcaacaatagaaaatgataaattaaacctatttctaatcatatcctattcaccctttg 556851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 556467 - 556628
Alignment:
Q  41 tcatatttttagattacatggattgaggttgactaatctggac---------------ctcaacgagttcattaagaatatcaacgacaagaattgaggc 125  Q
    |||||||||||||||||||||||||||||||||||||||| ||               ||||||||||||||||||||||||||||||||||||||||||    
T  556467 tcatatttttagattacatggattgaggttgactaatctgaactacaataaagcttacctcaacgagttcattaagaatatcaacgacaagaattgaggc 556566  T
Q  126 tttattagggaagaacctgcaaataggaagttcataatcaattacatattacaatatataga 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  556567 tttattagggaagaacctgcaaataggaagttcataatcaattacatattacaatatataga 556628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 352
Target Start/End: Original strand, 22573077 - 22573207
Alignment:
Q  222 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 321  Q
    |||||||| ||| ||||||||||||| | |||||||| |    ||| ||||||||  ||||||| ||||| ||||| ||| || ||||||||| || |||    
T  22573077 cccgtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaac 22573176  T
Q  322 ttatttctaatcctatcctattcaccctttg 352  Q
     | ||||||||||||||||||| | ||||||    
T  22573177 ctgtttctaatcctatcctattgaacctttg 22573207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 352
Target Start/End: Original strand, 31734258 - 31734388
Alignment:
Q  222 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 321  Q
    |||||||| |||||||||||  |||| | |||||||||   |  || ||||||| |  |||||| ||||| ||||| |||||  ||||||||||||||||    
T  31734258 cccgtttggtgcacatgatagagagacatgatatgataggactttcctatcctgctttaatccgttgtttggtgcaccaataagaaatgataaattaaac 31734357  T
Q  322 ttatttctaatcctatcctattcaccctttg 352  Q
     |||||| |||| ||||| || |||||||||    
T  31734358 ctatttccaatcttatcccatccaccctttg 31734388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 11066502 - 11066555
Alignment:
Q  299 caatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 352  Q
    |||||| ||| ||||| |||||| ||||||||||||||||||| ||| ||||||    
T  11066502 caataggaaaggataacttaaacctatttctaatcctatcctactcagcctttg 11066555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 225 - 352
Target Start/End: Original strand, 26793702 - 26793829
Alignment:
Q  225 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 324  Q
    ||||| ||||||||||||| ||| | ||||||||| | | ||| ||||||||| ||||||| ||||| ||||| |||||||||| ||||| |||||||||    
T  26793702 gtttggtgcacatgataagaagacatgatatgatagaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataacttaaactta 26793801  T
Q  325 tttctaatcctatcctattcaccctttg 352  Q
    ||||||||||||||||| ||| ||||||    
T  26793802 tttctaatcctatcctaatcaacctttg 26793829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 222 - 352
Target Start/End: Complemental strand, 19806931 - 19806799
Alignment:
Q  222 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgt--gcaacaatagaaaatgataaattaa 319  Q
    |||||||| ||||||||||||||||||||||||||||||  | ||| |||||| || ||||| | ||||| ||  ||| |||||| ||| ||||||||||    
T  19806931 cccgtttggtgcacatgataaggagataggatatgataacactatcctatccttattcaatctggtgtttggtttgcatcaataggaaaggataaattaa 19806832  T
Q  320 acttatttctaatcctatcctattcaccctttg 352  Q
    || |||||||||||||||||||||||| |||||    
T  19806831 acctatttctaatcctatcctattcactctttg 19806799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 225 - 352
Target Start/End: Complemental strand, 4076516 - 4076389
Alignment:
Q  225 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 324  Q
    ||||| ||||||||||||||||||||||||||||||  | ||| || ||| ||  |||| | ||||| ||||| |||||| ||| |||||||||||| ||    
T  4076516 gtttggtgcacatgataaggagataggatatgataacactatcatacccttatttaatctggtgtttggtgcatcaataggaaaggataaattaaaccta 4076417  T
Q  325 tttctaatcctatcctattcaccctttg 352  Q
    || ||||||||||||||||||| |||||    
T  4076416 ttactaatcctatcctattcactctttg 4076389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 239 - 352
Target Start/End: Complemental strand, 50005052 - 50004939
Alignment:
Q  239 ataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatc 338  Q
    ||||| ||||||||||||||||| | ||| |||| | ||| |||  | ||||| ||||| ||||| |||| ||||| |||||| ||||||||||||||||    
T  50005052 ataagaagataggatatgataaaactatcatatcttaatctaatttgatgtttggtgcaccaataaaaaaggataatttaaacctatttctaatcctatc 50004953  T
Q  339 ctattcaccctttg 352  Q
    ||| ||||||||||    
T  50004952 ctaatcaccctttg 50004939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 352
Target Start/End: Original strand, 4950136 - 4950263
Alignment:
Q  225 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 324  Q
    ||||| ||||||||||||| | ||| ||||||||||||  ||| |||| || | ||||  | ||||| ||||| |||||||||||||||| ||||||| |    
T  4950136 gtttggtgcacatgataagaaaataagatatgataaacatatcctatcttgtttcaatttgatgtttggtgcatcaatagaaaatgataatttaaactca 4950235  T
Q  325 tttctaatcctatcctattcaccctttg 352  Q
    |||  |||| ||||||||| ||||||||    
T  4950236 ttttcaatcatatcctatttaccctttg 4950263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 9383384 - 9383270
Alignment:
Q  238 gataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctat 337  Q
    |||| ||||| | ||||||||||| | |||  ||||||||  |||||  ||||| ||||| |||||| ||  ||||||||||||  |||||||||| |||    
T  9383384 gatagggagaaaagatatgataaaactatcacatcctgattaaatccattgtttggtgcaccaataggaacggataaattaaaccaatttctaatcttat 9383285  T
Q  338 cctattcaccctttg 352  Q
    |||| ||||||||||    
T  9383284 cctactcaccctttg 9383270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 6768281 - 6768334
Alignment:
Q  299 caatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 352  Q
    ||||||||||||||||||||||||||||||  ||||||| |||| || ||||||    
T  6768281 caatagaaaatgataaattaaacttatttcctatcctattctatccaacctttg 6768334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 28884005 - 28883929
Alignment:
Q  269 tatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattca 345  Q
    |||| |||| |||||| |||||| ||||| |||||| | | |||||||||||||| || ||||||||||| ||||||    
T  28884005 tatcttgattcaatccactgtttggtgcaccaatagtataggataaattaaactttttcctaatcctatcttattca 28883929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 347
Target Start/End: Original strand, 30209689 - 30209813
Alignment:
Q  223 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 322  Q
    ||||||| ||||||||||||| ||  ||| |||||||||   ||| ||||||  |  |||| | ||||| || || ||||||||||||||||| ||| ||    
T  30209689 ccgtttggtgcacatgataagaagtcagggtatgataaaattatcatatcctacttaaatctgttgtttggtacaccaatagaaaatgataaaataatct 30209788  T
Q  323 tatttctaatcctatcctattcacc 347  Q
     ||| || |||||||||||||||||    
T  30209789 cattacttatcctatcctattcacc 30209813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 614976 - 614929
Alignment:
Q  305 aaaatgataaattaaacttatttctaatcctatcctattcaccctttg 352  Q
    |||||||||||||||||| |||||||||| ||| ||| ||||||||||    
T  614976 aaaatgataaattaaactaatttctaatcttattctactcaccctttg 614929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 12855408 - 12855371
Alignment:
Q  222 cccgtttgatgcacatgataaggagataggatatgata 259  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  12855408 cccgtttggtgcacatgataaggagacaggatatgata 12855371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 259 - 352
Target Start/End: Original strand, 44125983 - 44126076
Alignment:
Q  259 aaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 352  Q
    ||||||||| ||||||||||||||  ||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  44125983 aaaccaatcatatcctgatccaatatgctatttggtgcagcaataggaaatgataaattaaacttatttctaatcctatcctattcaccttttg 44126076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 19181585 - 19181457
Alignment:
Q  223 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 322  Q
    ||||||| |||||||||||  |||| | |||||||||||   ||| |||||||||||||||   ||||| ||||| ||| |  | ||||||||||||||     
T  19181585 ccgtttggtgcacatgatagagagacatgatatgataaaattatcctatcctgatccaatctattgtttggtgcaccaacatgatatgataaattaaacc 19181486  T
Q  323 tatttctaatcctatcctattcacccttt 351  Q
    ||||||||||||||||||| ||| |||||    
T  19181485 tatttctaatcctatcctactcatccttt 19181457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 342
Target Start/End: Complemental strand, 45413942 - 45413823
Alignment:
Q  223 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 322  Q
    ||||||| ||||| ||||| ||||| |||||| |||| | | ||| |||| |||| ||||| | ||||| ||||| |||||| ||| ||||||||||||     
T  45413942 ccgtttggtgcacttgatagggagacaggataggatagaactatcatatcttgattcaatcggttgtttggtgcaccaataggaaaggataaattaaacc 45413843  T
Q  323 tatttctaatcctatcctat 342  Q
    ||||||  ||||||||||||    
T  45413842 tatttcctatcctatcctat 45413823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 2183302 - 2183367
Alignment:
Q  287 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 352  Q
    ||||| ||||| |||||||||| ||||||||||||| ||||| ||||||||||||| || ||||||    
T  2183302 tgtttggtgcaccaatagaaaaggataaattaaactcatttccaatcctatcctatccaacctttg 2183367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 36625644 - 36625579
Alignment:
Q  287 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 352  Q
    ||||| |||||  ||||| | |||||||||||||| |||| | |||||||||||||||||||||||    
T  36625644 tgtttggtgcactaataggatatgataaattaaacctattacgaatcctatcctattcaccctttg 36625579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 55945768 - 55945703
Alignment:
Q  279 caatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattc 344  Q
    ||||||| ||||| ||||| |||||| ||| |||||||  ||  ||||||||||||||||||||||    
T  55945768 caatccgttgtttggtgcaccaataggaaaggataaatccaatctatttctaatcctatcctattc 55945703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 351
Target Start/End: Original strand, 40626420 - 40626540
Alignment:
Q  231 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 330  Q
    ||||||||||| | ||| ||||||||||||| | ||| |||| |||| ||||| ||||||| ||||| |||||| ||| ||||| |||||  ||||||||    
T  40626420 tgcacatgataggaagacaggatatgataaaactatcatatcttgattcaatctgctgtttggtgcaccaataggaaaggataatttaaatatatttcta 40626519  T
Q  331 atcctatcctattcacccttt 351  Q
    ||||||||||| |||||||||    
T  40626520 atcctatcctactcacccttt 40626540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 352
Target Start/End: Original strand, 6457543 - 6457670
Alignment:
Q  225 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 324  Q
    ||||| |||||||||||  |||| ||||||||||| | | ||| |||| |||| ||||| | ||||| ||||| ||||||||||||||||||||||   |    
T  6457543 gtttggtgcacatgatagagagacaggatatgatagaactatcatatcatgattcaatctgttgtttggtgcaccaatagaaaatgataaattaaatcaa 6457642  T
Q  325 tttctaatcctatcctattcaccctttg 352  Q
    |||| |||| |||| ||| |||||||||    
T  6457643 tttccaatcatatcttatccaccctttg 6457670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 343
Target Start/End: Original strand, 7670385 - 7670440
Alignment:
Q  288 gtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctatt 343  Q
    |||| ||||| |||||||||||||||| || ||| | |||||||||||||||||||    
T  7670385 gtttggtgcaccaatagaaaatgataagtttaacctgtttctaatcctatcctatt 7670440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 40054571 - 40054516
Alignment:
Q  287 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctat 342  Q
    ||||| ||||| ||||||||||||||||| ||||| ||||  ||||||||||||||    
T  40054571 tgtttggtgcaccaatagaaaatgataaactaaacctattgttaatcctatcctat 40054516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 5256379 - 5256440
Alignment:
Q  282 tccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctatt 343  Q
    |||||||||| ||||| |  ||| |||||||||||||||||| ||  |||||||||||||||    
T  5256379 tccgctgtttggtgcaccggtaggaaatgataaattaaacttgttgttaatcctatcctatt 5256440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 6452491 - 6452535
Alignment:
Q  308 atgataaattaaacttatttctaatcctatcctattcaccctttg 352  Q
    |||||||||||||| |||| |||||| |||||||||||| |||||    
T  6452491 atgataaattaaacctattactaatcttatcctattcacgctttg 6452535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 351
Target Start/End: Complemental strand, 32529549 - 32529420
Alignment:
Q  224 cgtttgatgcacatgataaggagataggatatgataaaccaatcgtat--cctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 321  Q
    |||||||||||||||||||| ||| | ||||||||||| | ||| |||  | |  | ||||||||||||| ||||| ||||| ||||  |||||||||||    
T  32529549 cgtttgatgcacatgataagaagacaagatatgataaaactatcatatatcttacttcaatccgctgtttggtgcaccaataaaaaagaataaattaaac 32529450  T
Q  322 ttatttctaatcctatcctattcacccttt 351  Q
    |||||||||||| |||| |||||| |||||    
T  32529449 ttatttctaatcatatcttattcatccttt 32529420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 342
Target Start/End: Original strand, 34731215 - 34731331
Alignment:
Q  226 tttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttat 325  Q
    |||| ||| |||||||| |||||||||||||||||  | ||| ||||||  |  |||||  ||||| ||||| |||||| ||| |||||| ||||| |||    
T  34731215 tttggtgcgcatgataaagagataggatatgataacactatcatatcctatttaaatcccttgtttggtgcaccaataggaaaggataaactaaacctat 34731314  T
Q  326 ttctaatcctatcctat 342  Q
    |  ||||||||||||||    
T  34731315 tgttaatcctatcctat 34731331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 13109730 - 13109781
Alignment:
Q  301 atagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 352  Q
    |||||||||||||| || ||| ||||||||||| |||||||| |||||||||    
T  13109730 atagaaaatgataagtttaacatatttctaatcatatcctatccaccctttg 13109781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 352
Target Start/End: Complemental strand, 8573952 - 8573831
Alignment:
Q  231 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 330  Q
    ||||||||||||| | | || |||||||||| ||||  ||||||| | |||||| | |||| | ||| |||||| ||||||||| |||||| ||||||||    
T  8573952 tgcacatgataagaaaacagaatatgataaaacaattctatcctgtttcaatcctccgtttggagcatcaataggaaatgataacttaaacctatttcta 8573853  T
Q  331 atcctatcctattcaccctttg 352  Q
    ||| |||| |||||||||||||    
T  8573852 atcttatcatattcaccctttg 8573831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 352
Target Start/End: Complemental strand, 8547599 - 8547478
Alignment:
Q  231 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 330  Q
    ||||||||||| | | | || |||||||||| ||||  |||| || | |||||||| |||| | ||| |||||| ||| ||||| |||||| ||||||||    
T  8547599 tgcacatgataggaaaacagaatatgataaaacaattctatcatgtttcaatccgccgtttggagcatcaataggaaaggataacttaaacctatttcta 8547500  T
Q  331 atcctatcctattcaccctttg 352  Q
    ||| |||| |||||||||||||    
T  8547499 atcttatcatattcaccctttg 8547478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 341
Target Start/End: Original strand, 40416900 - 40417009
Alignment:
Q  232 gcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaa 331  Q
    |||||||||| | ||| ||||||||| ||| | ||| ||||||| | ||||||| ||||| ||||| ||| ||||||||||||||||||  ||||| |||    
T  40416900 gcacatgataggaagacaggatatgaaaaaactatcatatcctgcttcaatccgttgtttggtgcatcaacagaaaatgataaattaaatatatttttaa 40416999  T
Q  332 tcctatccta 341  Q
    ||||||||||    
T  40417000 tcctatccta 40417009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 46713953 - 46713885
Alignment:
Q  82 acctcaacgagttcattaagaatatcaacgacaagaattgaggctttattagggaagaacctgcaaata 150  Q
    |||||||| | |||||| |||||||||||  || |||||| |||||||| |||||||||||| ||||||    
T  46713953 acctcaactaattcatttagaatatcaactgcaggaattgtggctttatcagggaagaacctacaaata 46713885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 38457767 - 38457809
Alignment:
Q  310 gataaattaaacttatttctaatcctatcctattcaccctttg 352  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||    
T  38457767 gataatttaaactcatttctaatcctatcctattcaccttttg 38457809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 51976195 - 51976260
Alignment:
Q  287 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 352  Q
    ||||| ||||| ||||||||||||||||  |||   ||||||||||| ||||||||||||| ||||    
T  51976195 tgtttggtgcaccaatagaaaatgataagctaaggctatttctaatcttatcctattcaccatttg 51976260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 352
Target Start/End: Complemental strand, 2334161 - 2334029
Alignment:
Q  223 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctga---tccaatccgctgtttcgtgcaacaatagaaaatgataaattaa 319  Q
    ||||||||||| ||||||||||||| | ||||||||||  | ||| ||||||||   | ||||||| ||||| ||||| |||||| |   ||||| ||||    
T  2334161 ccgtttgatgcgcatgataaggagacatgatatgataacactatcatatcctgaatattcaatccggtgtttggtgcaccaataggattggataacttaa 2334062  T
Q  320 acttatttctaatcctatcctattcaccctttg 352  Q
    || ||||| ||||||||||||||||||| ||||    
T  2334061 acctatttttaatcctatcctattcaccttttg 2334029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 352
Target Start/End: Complemental strand, 41482593 - 41482463
Alignment:
Q  222 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 321  Q
    |||||||| ||||||||||| | ||| | |||| |||||| | ||| | |||||||  ||| |||||||| ||||| ||| || ||| ||||| ||||||    
T  41482593 cccgtttggtgcacatgataggaagacatgataggataaaactatcatctcctgatttaatgcgctgtttggtgcaccaacaggaaaggataacttaaac 41482494  T
Q  322 ttatttctaatcctatcctattcaccctttg 352  Q
     ||||| ||||| ||||||| ||||||||||    
T  41482493 ctatttttaatcatatcctactcaccctttg 41482463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 351
Target Start/End: Original strand, 5784255 - 5784382
Alignment:
Q  224 cgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactt 323  Q
    |||||| | |||||||||| ||||||| ||||||| ||   ||  |||| |||||||||| |   ||| ||||| ||||| |||| ||||| ||||||||    
T  5784255 cgtttggtacacatgataaagagatagcatatgatgaaattattatatcttgatccaatcagtaatttggtgcatcaataaaaaaggataagttaaactt 5784354  T
Q  324 atttctaatcctatcctattcacccttt 351  Q
    |||||||||| |||| |||||| |||||    
T  5784355 atttctaatcgtatcatattcatccttt 5784382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 24429679 - 24429762
Alignment:
Q  269 tatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 352  Q
    ||||||||| || || |||| ||  |||| |||||||||||||||| |||||  ||||| |||||||||| || ||||||||||    
T  24429679 tatcctgattcattctgctgcttgatgcaccaatagaaaatgataatttaaaactatttataatcctatcttactcaccctttg 24429762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 41147966 - 41147920
Alignment:
Q  287 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatc 333  Q
    ||||| ||||| |||||||||| |||||||||||||||||| |||||    
T  41147966 tgtttggtgcatcaatagaaaaggataaattaaacttatttataatc 41147920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 352
Target Start/End: Complemental strand, 23319098 - 23318981
Alignment:
Q  235 catgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcc 334  Q
    ||||||||| ||| ||||||||||||  | ||| |||||||||  |||| | ||||| || || ||| |  ||| ||||| |||||| ||||| ||||||    
T  23319098 catgataagaagacaggatatgataacactatcatatcctgattaaatctgttgtttggtccaccaacatgaaaggataatttaaacctatttttaatcc 23318999  T
Q  335 tatcctattcaccctttg 352  Q
    ||||||||| | ||||||    
T  23318998 tatcctattgagcctttg 23318981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 352
Target Start/End: Original strand, 39594599 - 39594707
Alignment:
Q  244 gagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctatt 343  Q
    |||| ||||||||||||| | ||| ||||||  |  |||||| ||||| ||||| |||||  | ||| |||||||||| |||| |||||| |||| ||||    
T  39594599 gagagaggatatgataaaactatcatatcctacttaaatccgttgtttggtgcaccaataagatatgctaaattaaacctattactaatcttatcatatt 39594698  T
Q  344 caccctttg 352  Q
    || ||||||    
T  39594699 catcctttg 39594707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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