View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_39 (Length: 390)
Name: NF10151A_low_39
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 338
Target Start/End: Original strand, 32834041 - 32834358
Alignment:
| Q |
15 |
aagaagatgaatgaagagtggttgattggttttattatatatnnnnnnn-gtggggtgggggtgtgagttgcacacgtttggattcggaaacagaaagaa |
113 |
Q |
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| T |
32834041 |
aagaagatgaatgaagagtggttgattggttttattatatatataaaaaagtggggtgggggtgtgagatgcacacgtttggattcggaaacagaaagaa |
32834140 |
T |
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| Q |
114 |
aggatcaagtcaggtcatccacttattattcaaacaaacatggatggctccacctatctgtttctctctgtcttacacctcgacttgcctgcctattctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32834141 |
aggatcaagtcaggtcatccacttattattcaaacaaacatggatggctccacctatctgtttctctctgtcttacacctcgacttgcctgcctattctt |
32834240 |
T |
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| Q |
214 |
catatctttaacagtaaatctattccaaacaagttataa---ctt--aaaagtgattgttttcttttaaaaatgtaatttttcaggggaaaatatgtaag |
308 |
Q |
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| T |
32834241 |
caaatcttttacagtaaatctattccaaacaagttataataacttctaaaagtgattgttttatttttaaaatgtaattt-----------atatgtaag |
32834329 |
T |
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| Q |
309 |
aaacataattaatttcaaagacaattgtta |
338 |
Q |
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|||||||||||||||| ||||||||||||| |
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| T |
32834330 |
aaacataattaatttc-aagacaattgtta |
32834358 |
T |
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