View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_4 (Length: 522)
Name: NF10151A_low_4
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 177 - 522
Target Start/End: Original strand, 33600749 - 33601092
Alignment:
| Q |
177 |
gtgtactctcacatgtgtccatctgagacaacaaataaaatgctcctgcgccattccctcgtccataggaggaaggacatctgtgaaaaatttacaaaca |
276 |
Q |
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| T |
33600749 |
gtgtactctcaaatgtgtccatctgagacaacaaatcaaatgc--ctgcgccattccctcgtccataggaggaaggacatctgtgaaaaatttacaaaca |
33600846 |
T |
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| Q |
277 |
ttcaaaagattatgttatccctcacacaacagtcaaaatgctagcagaaaattcgtagttataataaagaaatttaataagttcaacaataaacatcaca |
376 |
Q |
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| T |
33600847 |
ttcaaaagattatgttatccctcacacaacagtcaaaatgcttgcagaaaattcgtagttataataaagaaatttaataagttcaacaataaacatcaca |
33600946 |
T |
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| Q |
377 |
taataacatataaaaattaacttcaattacaaacaacaaattgaagcttagtaaaaagttaaaacataaattctgacaagaaaataaggtttaacaataa |
476 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33600947 |
taataagatataaaaattaacttcaattacaaacaacaaattgaagcttagtaaaaagttaaaacataaattctgacaagaaaataaggtttaacaataa |
33601046 |
T |
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| Q |
477 |
acattacataaataatattaaagctttggaaaaatttatagatata |
522 |
Q |
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| T |
33601047 |
acattacataaataatattaaagctttggaaaaatttatagatata |
33601092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 33600536 - 33600616
Alignment:
| Q |
4 |
gaacaaaatgaaaccaatacaataaannnnnnnaaaatattatgttaagcaacaacctcatcgagcaaagacctcctaaat |
84 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33600536 |
gaacaaaatgaaaccaatacaataaaaatttataaaatattatgttaagcaacaacctcatcgagcaaagacctcctaaat |
33600616 |
T |
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