View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_41 (Length: 386)

Name: NF10151A_low_41
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_41
NF10151A_low_41
[»] chr1 (1 HSPs)
chr1 (7-374)||(7440462-7440833)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 374
Target Start/End: Original strand, 7440462 - 7440833
Alignment:
Q  7 ctaagactgttagactttcttttgtaatggaatcgtaccccacaatcaaagatatttaggtgttagaaggttcatttgccctcaatcctccttctagcac 106  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  7440462 ctaagactgttatactttcttttgtaatggaatcgtaccccacaatcaaagatatttaggtgctaaaaggttcatttgccctcaatcctccttctagcac 7440561  T
Q  107 caatgttttgatatcaagtttgatttaaaacatgtttaggtattgattgctttgactcctttataagtcatcacaattttcttctttgtta----aatgg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  7440562 caatgttttgatatcaagtttgatttaaaacatgtttaggtattgattgctttgactcctttataagtcatcacaattttcttctttgttaaattaatgg 7440661  T
Q  203 ctagagtgaattgaggaaatcaagcgttataaattatctttaattttgatttctaagttgttaaagtatacctaatatatgcaaaacattaaagaaggca 302  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  7440662 ctagagtgaattgaggaaatcaagtgttataaattatctttaattttgatttctaagttgttaaagtttacctaatatatgcaagacattaaataaggca 7440761  T
Q  303 agggccggttgtattatggctcatcagaggtaatattgttaactgaatcatagcagtaatactatatatatt 374  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  7440762 aggggcggtagtagtatggctcatcagaggtaatattgttaactgaatcatagtagtaatattatatatatt 7440833  T

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