View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_41 (Length: 386)
Name: NF10151A_low_41
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 374
Target Start/End: Original strand, 7440462 - 7440833
Alignment:
| Q |
7 |
ctaagactgttagactttcttttgtaatggaatcgtaccccacaatcaaagatatttaggtgttagaaggttcatttgccctcaatcctccttctagcac |
106 |
Q |
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| T |
7440462 |
ctaagactgttatactttcttttgtaatggaatcgtaccccacaatcaaagatatttaggtgctaaaaggttcatttgccctcaatcctccttctagcac |
7440561 |
T |
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| Q |
107 |
caatgttttgatatcaagtttgatttaaaacatgtttaggtattgattgctttgactcctttataagtcatcacaattttcttctttgtta----aatgg |
202 |
Q |
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| T |
7440562 |
caatgttttgatatcaagtttgatttaaaacatgtttaggtattgattgctttgactcctttataagtcatcacaattttcttctttgttaaattaatgg |
7440661 |
T |
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| Q |
203 |
ctagagtgaattgaggaaatcaagcgttataaattatctttaattttgatttctaagttgttaaagtatacctaatatatgcaaaacattaaagaaggca |
302 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| |
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| T |
7440662 |
ctagagtgaattgaggaaatcaagtgttataaattatctttaattttgatttctaagttgttaaagtttacctaatatatgcaagacattaaataaggca |
7440761 |
T |
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| Q |
303 |
agggccggttgtattatggctcatcagaggtaatattgttaactgaatcatagcagtaatactatatatatt |
374 |
Q |
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|||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
7440762 |
aggggcggtagtagtatggctcatcagaggtaatattgttaactgaatcatagtagtaatattatatatatt |
7440833 |
T |
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