View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_42 (Length: 383)
Name: NF10151A_low_42
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_42 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 383
Target Start/End: Complemental strand, 40615020 - 40614648
Alignment:
| Q |
21 |
tcattagcaatagaatgaagaatcttatcgtattcaagaatcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataaca |
120 |
Q |
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| T |
40615020 |
tcattagcaatagaatgaagaatcttatcatattcaagaatcaagaccaagattctgaacaatagtaggaagacattgaacatcgggacgagagataaca |
40614921 |
T |
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| Q |
121 |
cggagagtgagattcaccgggtcatgatcatcggtagcgaagatggctgagagagtgtgag----------gacatccaagatgtagggcttttgaaccc |
210 |
Q |
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| T |
40614920 |
cggagagtgagattcaccggctcatgatcatcggtagcgaagatggctgagagagtgtgagtacgagcgcggacatccaagatgtagggcttttgaaccc |
40614821 |
T |
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| Q |
211 |
atgggatcaggaaatgagttccttcaccaacagattctggaagagtgtcgtggaattggtcgacaaggacagaggagtacacagtagttgcagcggcgcc |
310 |
Q |
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| T |
40614820 |
atgggatcaggaaatgagttccttcaccaacagattctggaagagtgccgtggaattggtcgacaaggacagaggagtacacagtagttgcagcggcgcc |
40614721 |
T |
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| Q |
311 |
gagacccaaagccaagcgtgctttcttggagaggatggatgctattgctttgctgcttatcattttggagaaa |
383 |
Q |
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| T |
40614720 |
gagacccaaagccaagcgagctttcttggagacgatggatgctattgctttgctgcttatcattttggagaaa |
40614648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 61 - 280
Target Start/End: Complemental strand, 40611046 - 40610817
Alignment:
| Q |
61 |
tcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataacacggagagtgagattcaccgggtcatgatcatcggtagcga |
160 |
Q |
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| T |
40611046 |
tcaagaccaagattctgaacaatagtaggaagacgttgaacctcgggacgagagataacacggagagtgagattcaccggctcatgatcatcggtagcgg |
40610947 |
T |
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| Q |
161 |
agatggctgagagagtgtga----------ggacatccaagatgtagggcttttgaacccatgggatcaggaaatgagttccttcaccaacagattctgg |
250 |
Q |
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| T |
40610946 |
agatggctgagagcctgtgagtacgagggcggaggtcgaagatgtagggcttttgaacccatgggatcttgaaatgaattcctttgccgacggatctggg |
40610847 |
T |
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| Q |
251 |
aagagtgtcgtggaattggtcgacaaggac |
280 |
Q |
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| T |
40610846 |
aagagtgccgtggaatcggtcgacgaggac |
40610817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 40610743 - 40610693
Alignment:
| Q |
324 |
aagcgtgctttcttggagaggatggatgctattgctttgctgcttatcatt |
374 |
Q |
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| T |
40610743 |
aagcgtgctttcttgaagaggttggatgcttttgcttggctgcttaccatt |
40610693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 61 - 247
Target Start/End: Original strand, 1385032 - 1385228
Alignment:
| Q |
61 |
tcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataacacggagagtgagattcaccgggtcatgatcatcggtagcga |
160 |
Q |
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|||||||| ||||||||||||||||||||||||| || || ||| |||||||||| |||||| ||||||||||||||| | | |||| | |||| || |
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| T |
1385032 |
tcaagaccgagattctgaacaatagtaggaagacgttcagtatcaggacgagagagaacacgaagagtgagattcaccatctgaagatctttggtaccgg |
1385131 |
T |
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| Q |
161 |
agatggctgagagagtgtga----------ggacatccaagatgtagggcttttgaacccatgggatcaggaaatgagttccttcaccaacagattc |
247 |
Q |
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| T |
1385132 |
agatggatgagaatgtgtgaggtcgagtgcggatatcgaagacgtaaggcttttgaacccatgggatgaggaaatgagttccttcaccgactgattc |
1385228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 231814 - 231737
Alignment:
| Q |
61 |
tcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataacacggagagtgagattcacc |
138 |
Q |
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| T |
231814 |
tcaagaccaaaattccgaacaatagtaggaagacattgagtatcaggacgagagagaacacgaagagtaaaattcacc |
231737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 18133313 - 18133264
Alignment:
| Q |
189 |
aagatgtagggcttttgaacccatgggatcaggaaatgagttccttcacc |
238 |
Q |
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| T |
18133313 |
aagatgtaaggcttttgaacccatgggatgaggaaatgggttccttcacc |
18133264 |
T |
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