View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151A_low_49 (Length: 364)
Name: NF10151A_low_49
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_49 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 7 - 352
Target Start/End: Original strand, 7176594 - 7176939
Alignment:
| Q |
7 |
caaataactcaaaagatactttatgtttttctgagtttgattctttgtgggacaagcacatctaagaggaacgagtagttttccaccaggatatacatca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
7176594 |
caaataactcaaaagatactttatgtttttctgagtttgattctttgtaggacaagcacatctaagaggaacaagtagttttctaccaggatatacatca |
7176693 |
T |
|
| Q |
107 |
ccaggattatgattttcatgcatcaaagcttgacatgttgaaagtccttcaaaagtgttgttagcaactataaaataagtgtctgtgttttgaaaaacat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7176694 |
ccaggattatgattttcatgcatcaaagcttgacatgttgaaagtccttcaaaagtgttgttagcaactataaaataagtgtctgtgttttgaaaaacat |
7176793 |
T |
|
| Q |
207 |
aggatgtatttgcttgataatagttaccagaacaagaacaattgacaggaacaattaccattttgtttgtttcgaatgtttcgtttaaagaaacggagtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7176794 |
aggatgtatttgcttgataatagttaccagaacaagaacaattgacaggaacaattaccattttgtttgtttcgaatgtttcgtttaaagaaacggagtt |
7176893 |
T |
|
| Q |
307 |
tatttcggcgagttgagatggatttgagcctagtaatgatgatatt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7176894 |
tatttcggcgagttgagatggatttgagcctagtaatgatgatatt |
7176939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University