View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_50 (Length: 362)
Name: NF10151A_low_50
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 35 - 347
Target Start/End: Complemental strand, 47252081 - 47251770
Alignment:
| Q |
35 |
ataattcctatacacatctaaaacttttccttcaaaacaaaatggttactaaaaccttatgcaattttcagaataagaataaaggtgtatgagtatcatg |
134 |
Q |
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| T |
47252081 |
ataattcctatacacatctaaaacttttccttcaaaacaaaatggttactaaaaccttatgcaattttcagaataagaataaaggtgtatgagtatcatg |
47251982 |
T |
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| Q |
135 |
nnnnnnnnnnnnnnnnnctatatatgttcaatctatcgaaattaatcttaaatgnnnnnnnnnnnnnnnncttatatatgttcaatctattgaaagtaat |
234 |
Q |
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| T |
47251981 |
ttttttgtttttgttttttatatatgttcaatctatcgaaagtaatcttaa-tgttttttgtttttgtttcttatatatgttcaatctatcgaaagtaat |
47251883 |
T |
|
| Q |
235 |
cttaatcgagacgtatattgtcagacattaaatatatagatatttctcttagtcgcgatttaaacattgattcaggtagttgtgagaatttaatcaattt |
334 |
Q |
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| T |
47251882 |
cttaatcgagacgtatattgtcagacattaaatatatagatatttctcttagtcgcgattcaaacattgattcagatagttgtgagaatttaatcaattt |
47251783 |
T |
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| Q |
335 |
tgctaaactcaat |
347 |
Q |
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| T |
47251782 |
tgctaaactcaat |
47251770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 47252608 - 47252575
Alignment:
| Q |
7 |
gtccgaccatgcatccttgttattatttataatt |
40 |
Q |
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| T |
47252608 |
gtccgaccatgcatccttgttattatttataatt |
47252575 |
T |
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