View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151A_low_51 (Length: 355)
Name: NF10151A_low_51
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_51 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 29990277 - 29990612
Alignment:
| Q |
19 |
acatcacgagtttcaagataataagagatcaacttggagttctatatagtcttcaacttcaacattgttacgtacaaccaaaccattttttgtagacatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29990277 |
acatcacgagtttcaagataataagagatcaacttggagttctatatagtcttcaacttcaacattgttacgtacaaccaaaccattcattgtagacatg |
29990376 |
T |
|
| Q |
119 |
tcttttgcagtaacaacaacaatatttgctttccttctcttcactttcacatactttctattcaaactattcttgcattcaaaacaaaaaaccattatcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29990377 |
tcttttgcagtaacaacaacaatatttgctttccttctcttcactttcacatactttctattcaaactattcttgcattcaaaacaaaaaaccattatcc |
29990476 |
T |
|
| Q |
219 |
ataaaaaaccaccatgtccaccaacactaccaataataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaata |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29990477 |
ataaaaaaccaccatgtccaccaacactaccaataataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaata |
29990576 |
T |
|
| Q |
319 |
tggtccaattatgtctttacaacttggtcaagttcc |
354 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
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|
| T |
29990577 |
tggtccaattatgtctttacaacttggacaagttcc |
29990612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 27 - 351
Target Start/End: Complemental strand, 30045728 - 30045403
Alignment:
| Q |
27 |
agtttcaagataataagagatcaacttggagttctatatagtcttcaacttcaacattgttacgtacaaccaaaccattt-tttgtagacatgtcttttg |
125 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| || |||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
30045728 |
agtttcaagataatatgagatcaacttggagttctatatagtctttatcttcaaccttattacgtacaacccaaccattcatttgtagacatgtcttttg |
30045629 |
T |
|
| Q |
126 |
cagtaacaacaacaatatttgctttccttctcttcactttcacatactttctattcaaactattcttgcattcaaaacaaaaaaccattatccataaaaa |
225 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
30045628 |
cagtaacaacaataatatttgcttttcttctcttcactttcatgtactttctattcaaactcttcttacattcaaaacaaaaaaccattatccatgaaaa |
30045529 |
T |
|
| Q |
226 |
accaccatgtccaccaacactaccaataataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtcca |
325 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
30045528 |
accaccaggtccaccaacactaccaataatagggaaccttcacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtcca |
30045429 |
T |
|
| Q |
326 |
attatgtctttacaacttggtcaagt |
351 |
Q |
| |
|
|| ||||| ||||||||||||||||| |
|
|
| T |
30045428 |
atcatgtccttacaacttggtcaagt |
30045403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 28 - 354
Target Start/End: Original strand, 30005426 - 30005754
Alignment:
| Q |
28 |
gtttcaagataataagagatcaacttggagttctatatagtcttcaacttcaacattgttacgtac--------aaccaaaccattttttgtagacatgt |
119 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||| | |||||||||| ||||||| |||| |||||||||||| |
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|
| T |
30005426 |
gtttcaagataatctgagattaacttggagttctatatagtcttcaacct------tgttacgtacttcagccaaaccaaagcattcattgtagacatgt |
30005519 |
T |
|
| Q |
120 |
cttttgcagtaacaacaacaatatttgctttccttctcttcactttcacatactttctattcaaactattcttgcattcaaaacaaaaaaccattatcca |
219 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| | ||| ||| |||||||||||||| | | ||| |
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|
| T |
30005520 |
cttttgcactaacaacaacaatgtttgcttttcttctcttcactttcatgtactttctattcaaactctacttacatccaaaacaaaaaaccctaaacca |
30005619 |
T |
|
| Q |
220 |
taaaaaaccaccatgtccaccaacactaccaataataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatat |
319 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30005620 |
taaaaaaccaccaggtccatcaacactaccaataattggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatat |
30005719 |
T |
|
| Q |
320 |
ggtccaattatgtctttacaacttggtcaagttcc |
354 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |
|
|
| T |
30005720 |
ggtccaatcatgtccttacaacttggtcaagttcc |
30005754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 94 - 354
Target Start/End: Complemental strand, 30071490 - 30071230
Alignment:
| Q |
94 |
aaccaaaccattttttgtagacatgtcttttgcagtaacaacaacaatatttgctttccttctcttcactttcacatactttctattcaaactattcttg |
193 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| | ||| |
|
|
| T |
30071490 |
aaccaaaccattcattgtagacatgtcttttgcactaacaacaacaatgtttgcttttcttctcttcactttcatgtactttctattcaaactctactta |
30071391 |
T |
|
| Q |
194 |
cattcaaaacaaaaaaccattatccataaaaaaccaccatgtccaccaacactaccaataataggaaatcttcacatattaggcaaacttccacatagaa |
293 |
Q |
| |
|
||| |||||||||||||| | | |||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30071390 |
catccaaaacaaaaaaccctaaaccataaaaaaccaccaggtccaccatcactaccaataattggaaatcttcacatattaggcaaacttccacatagaa |
30071291 |
T |
|
| Q |
294 |
cacttcaatcactctccaaaaaatatggtccaattatgtctttacaacttggtcaagttcc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
30071290 |
cacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagttcc |
30071230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 94 - 351
Target Start/End: Original strand, 29943521 - 29943778
Alignment:
| Q |
94 |
aaccaaaccattttttgtagacatgtcttttgcagtaacaacaacaatatttgctttccttctcttcactttcacatactttctattcaaactattcttg |
193 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||||| || ||||||| || ||||||||||| |||||||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
29943521 |
aaccaaaccattcattgtagagatgtcttctgcagcaataacaacagtacttgctttccttatcttcactttcacatattttttatccaaactattcttg |
29943620 |
T |
|
| Q |
194 |
cattcaaaacaaaaaaccattatccataaaaaaccaccatgtccaccaacactaccaataataggaaatcttcacatattaggcaaacttccacatagaa |
293 |
Q |
| |
|
||| |||||||||||||||| | |||||||| |||||| |||||||| ||||||||||||| ||||| || ||||||||||||| ||||||||||||| |
|
|
| T |
29943621 |
catccaaaacaaaaaaccatcaatcataaaaagccaccaggtccaccatcactaccaataatcggaaacctccacatattaggcacccttccacatagaa |
29943720 |
T |
|
| Q |
294 |
cacttcaatcactctccaaaaaatatggtccaattatgtctttacaacttggtcaagt |
351 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
29943721 |
cacttcaatcactctccaaacaatatggtccaatcatgtccttacaactaggtcaagt |
29943778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 148 - 354
Target Start/End: Original strand, 29999110 - 29999316
Alignment:
| Q |
148 |
tttccttctcttcactttcacatactttctattcaaactattcttgcattcaaaacaaaaaaccattatccataaaaaaccaccatgtccaccaacacta |
247 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||| ||||| ||| |||||||||| ||||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
29999110 |
tttccttctcttcactttcatataccttttattcaaactcttcttacatccaaaacaaaataccattaaccataaaaagccaccaggtccaccaacacta |
29999209 |
T |
|
| Q |
248 |
ccaataataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaattatgtctttacaacttggtc |
347 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| |
|
|
| T |
29999210 |
ccaataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactctccaaaagatatggtccaatcatgtccttacaacttggtc |
29999309 |
T |
|
| Q |
348 |
aagttcc |
354 |
Q |
| |
|
||||||| |
|
|
| T |
29999310 |
aagttcc |
29999316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 148 - 354
Target Start/End: Original strand, 29949243 - 29949449
Alignment:
| Q |
148 |
tttccttctcttcactttcacatactttctattcaaactattcttgcattcaaaacaaaaaaccattatccataaaaaaccaccatgtccaccaacacta |
247 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| ||||| ||| |||||||||||| ||| | ||||||||| |||||| |||||||||||||| |
|
|
| T |
29949243 |
tttccttctcttcactttcacatgctttttattcaaacacttcttacatccaaaacaaaaaaacataaaccataaaaagccaccaggtccaccaacacta |
29949342 |
T |
|
| Q |
248 |
ccaataataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaattatgtctttacaacttggtc |
347 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
29949343 |
ccaataattggaaaccttcacctattaggtaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtc |
29949442 |
T |
|
| Q |
348 |
aagttcc |
354 |
Q |
| |
|
||||||| |
|
|
| T |
29949443 |
aagttcc |
29949449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 130 - 354
Target Start/End: Original strand, 29962783 - 29963007
Alignment:
| Q |
130 |
aacaacaacaatatttgctttccttctcttcactttcacatactttctattcaaactattcttgcattcaaaacaaaaaaccattatccataaaaaacca |
229 |
Q |
| |
|
|||||||| |||| || ||||| |||||||||||||||||||| || |||||||| | | ||| | | ||||||||| ||||| | |||||||||||| |
|
|
| T |
29962783 |
aacaacaataataattcctttcattctcttcactttcacataccttttattcaaattctacttacgtgaaaaacaaaacaccataaatcataaaaaacca |
29962882 |
T |
|
| Q |
230 |
ccatgtccaccaacactaccaataataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatta |
329 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| | |
|
|
| T |
29962883 |
ccaggtccaccaacactaccaataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatca |
29962982 |
T |
|
| Q |
330 |
tgtctttacaacttggtcaagttcc |
354 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
29962983 |
tgtccttacaacttggtcaagttcc |
29963007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 130 - 354
Target Start/End: Complemental strand, 30012015 - 30011791
Alignment:
| Q |
130 |
aacaacaacaatatttgctttccttctcttcactttcacatactttctattcaaactattcttgcattcaaaacaaaaaaccattatccataaaaaacca |
229 |
Q |
| |
|
|||||||| |||| || ||||| |||||||||||||||||||| || |||||||| | | ||| | | ||||||||| ||||| | |||||||||||| |
|
|
| T |
30012015 |
aacaacaataataattcctttcattctcttcactttcacataccttttattcaaattctacttacgtgaaaaacaaaacaccataaatcataaaaaacca |
30011916 |
T |
|
| Q |
230 |
ccatgtccaccaacactaccaataataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatta |
329 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| | |
|
|
| T |
30011915 |
ccaggtccaccaacactaccaataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatca |
30011816 |
T |
|
| Q |
330 |
tgtctttacaacttggtcaagttcc |
354 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
30011815 |
tgtccttacaacttggtcaagttcc |
30011791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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