View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_55 (Length: 347)
Name: NF10151A_low_55
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_55 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 7447495 - 7447137
Alignment:
| Q |
1 |
tatagcattgataatttgatgagcttaaaacacacgacacatgaatatatacatcttatagaaggtgacaaaaactaaagtagtggataccatacgattt |
100 |
Q |
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| T |
7447495 |
tatagcattgataatttgatgagcttaaaacacacgacacatgaatatatacatcttatagaaggtgacaaaaactaaagtagtggataccataccattt |
7447396 |
T |
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| Q |
101 |
ggagtcaaaatgaaaatcattatgttaatggatatatatgttcccaaatcatagttaaataaacacactagctaatagcaaacaattaatttacatattg |
200 |
Q |
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| T |
7447395 |
ggagtcaaaatgaaaatcattatgttaatggatatatatgttcccaaatcatagttaaataaacacactagctagtagcaaacaattaatttacatattg |
7447296 |
T |
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| Q |
201 |
ggatcattcacattatgtacaaatgcaatattattattactaatatattcttaatt---------------agtacaaacttatccattccatgccattt |
285 |
Q |
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| T |
7447295 |
ggatcattcacattatgtacaaatgcta---tattattactaatatattctttttttttttttcttctacatgtacaaacttatccattccatgccattg |
7447199 |
T |
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| Q |
286 |
tagtaacatgtctcattagccatgaaaaatacgtgataatcatatccgttatcaacaccaaa |
347 |
Q |
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| T |
7447198 |
tagtaacatgtttcattgggcatgaaaaatacgtcgtcatcatatccgttatcaacaccaaa |
7447137 |
T |
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