View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_58 (Length: 342)
Name: NF10151A_low_58
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 230 - 336
Target Start/End: Original strand, 21044026 - 21044132
Alignment:
| Q |
230 |
cctgttctttgtagtgttcattaagaagatcatccaacccaataaccttcttcctggttcacataaattttaattactcgttagaacctacgaagcactg |
329 |
Q |
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| T |
21044026 |
cctgttctttgtagtgttcattaagaagatcatccaacccaataaccttcttcctggttcacataaattttaattactcgttagaacctacgaagcactg |
21044125 |
T |
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| Q |
330 |
acacaga |
336 |
Q |
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| T |
21044126 |
acacaga |
21044132 |
T |
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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 21043890 - 21043960
Alignment:
| Q |
94 |
tattatacctgattgtgacatttctcaactagcctattcaaatgagcttccttacgatcttcatcatcgta |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21043890 |
tattatacctgattgtgacatttctcaactagcctattcaaatgagcttccttacgatcttcatcatcgta |
21043960 |
T |
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