View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_7 (Length: 485)
Name: NF10151A_low_7
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 482
Target Start/End: Original strand, 41222765 - 41223240
Alignment:
| Q |
7 |
gtgcaacccaataataaagtattgttcctagaaccagtgtgacacaacaaatactcctttaaccagtgaaatagaacgatctctacgtatatgctacaac |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| || ||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
41222765 |
gtgcaacccaataataaagtattgttcctagaaccagtttgacacaacacatactactgtaaccagtgaaatagaatgatctctacatatatgctacaac |
41222864 |
T |
|
| Q |
107 |
acaagctacatagtaaaacaacatagtcaccaatatgtcatgtcttctccatgttgaatcatgcaaagttggatgaaatcaaataacaagtgacatcggt |
206 |
Q |
| |
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| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41222865 |
ataagctacatagtaccacaacatagtcaccaatatgtcatgtcttctccatgttgaatcctgcaaagttggatgaaatcaaataacaagtgacatcggt |
41222964 |
T |
|
| Q |
207 |
gcttctgaaggcatcaaattacattcaaacatatttaactaggttcaagcttacctcaattattaactccactagaagctccttcattaatggatattga |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
41222965 |
gcttctgaaggcatcaaattacattcaaacatatttaactaggttcaagcttacctcaattattaactccactagtagctccttcattgatggatattga |
41223064 |
T |
|
| Q |
307 |
aaatgcttgggaccatttcctcttttatgatgccggtacaatagaatcatcgagtatagggttccagaagcctctaggatcagacaaaacccagcttact |
406 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41223065 |
aaatgcttcggaccatttcctcttttcagatgccggtacaacagaatcatcgaggaaagggttccagaagcctctaggatcagacaaaacccagctcact |
41223164 |
T |
|
| Q |
407 |
tttgttggtggtcttgctaagttatggatggaacctttatcgtcttcccctattttgattttcttctgagaatcat |
482 |
Q |
| |
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| T |
41223165 |
tttgttggtggtcttgctaagttatggatggaacctctatcgtcttcccctattttgattttcttctgagaatcat |
41223240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 482
Target Start/End: Complemental strand, 16234263 - 16233779
Alignment:
| Q |
7 |
gtgcaacccaataataaagtattgttcctagaaccagtgtgacacaacaaatactcctttaaccagtgaaatagaacgatctctacgta----tatgcta |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16234263 |
gtgcaacccaataataaagtattgttcctagaaccagtgtgacacaacaaatactcctttaaccagtgaaatagaacgatctctacgtacgtatatgcta |
16234164 |
T |
|
| Q |
103 |
caacacaagctacatagtaaaacaacata----gtcaccaatatgtcatgtcttctccatgttgaatcatgcaaagttggatgaaatcaaataacaagtg |
198 |
Q |
| |
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||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
16234163 |
caacataagctccatagtaaaacaacatatatagtcaccaatatgtcatgtcttctccatgttgaatcctgcaaagttggatgaaatccaataacaagtg |
16234064 |
T |
|
| Q |
199 |
acatcggtgcttctgaaggcatcaaattacattcaaacatatttaactaggttcaagcttacctcaattattaactccactagaagctccttcattaatg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |
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| T |
16234063 |
acatcggtgcttctgaaggcatcaaattacattcaaacatatttaactaggttcaagcttacctcaattattaactccacaagtagctccttcattgatg |
16233964 |
T |
|
| Q |
299 |
gatattgaaaatgcttgggaccatttcctctttt-atgatgccggtacaatagaatcatcgagtatagggttccagaagcctctaggatcagacaaaacc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
16233963 |
gatattgaaaatgcttgggaccatttcctcttttccagatgccggtacaatagaatcatcgaggatagggttccagaagcctctaggatcagacaaaacc |
16233864 |
T |
|
| Q |
398 |
cagcttacttttgttggtggtcttgctaagttatggatggaacctttatcgtcttcccctattttgattttcttctgagaatcat |
482 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16233863 |
cagcttacttttgttggtagtcttgctaagttatggatggaatctttatcggcttcccctattttgattttcttctgagaatcat |
16233779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 130 - 480
Target Start/End: Original strand, 41217096 - 41217458
Alignment:
| Q |
130 |
tagtcaccaatatgtcatgtcttctccatgttgaatcatgcaaagttggatgaaatcaaataacaagtgacatcggtgcttctgaaggcatcaaattaca |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||||||| |||||| ||| ||| |||| ||| | | | ||||||||| |
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|
| T |
41217096 |
tagtcaccaatatgtcatgtcttcttcattgtgaatcctgcaaggttggatgaaatcaagtaacaattgatatcagtgcgtctaacagtaccaaattaca |
41217195 |
T |
|
| Q |
230 |
ttcaaaca----tatttaactaggttcaagcttacctcaattattaactc-------cactagaagctccttcattaatggatattgaaaa-tgcttggg |
317 |
Q |
| |
|
| ||| | ||| ||||| |||||||| ||||||||| | ||| || || || | |||||||||| | |||||||||||| || || | |
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| T |
41217196 |
tgaaaagagatatatataacttggttcaaggttacctcaactgctaagtctagtgtccattaataactccttcattgaaggatattgaaaaatgtttcgt |
41217295 |
T |
|
| Q |
318 |
accatttcctcttttatgatgccggtacaatagaatcatcgagtatagggttccagaagcctctaggatcagacaaaacccagcttacttttgttggtgg |
417 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||||||| || | |||| |||||||||| | |||| ||||||||||||||||||||||||||||||| |
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|
| T |
41217296 |
tccatttcgtcttttcagatgttggtacaatagaatcatctaggaaagggctccagaagccaccaggaccagacaaaacccagcttacttttgttggtgg |
41217395 |
T |
|
| Q |
418 |
tcttgctaagttatggatggaacctttatcgtcttcccctattttgattttcttctgagaatc |
480 |
Q |
| |
|
| ||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
41217396 |
ttttgttaagttatggatggaacctccgtcgtcttcccccgttttgattttcttctgagaatc |
41217458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 41217009 - 41217055
Alignment:
| Q |
7 |
gtgcaacccaataataaagtattgttcctagaaccagtgtgacacaa |
53 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||||||||||||||||| |
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|
| T |
41217009 |
gtgcaacccaaaaataaaacattattcctagaaccagtgtgacacaa |
41217055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 482
Target Start/End: Complemental strand, 1598903 - 1598413
Alignment:
| Q |
7 |
gtgcaacccaataataaagtattgttcctagaaccagtgtgacacaacaaatactcctttaaccagtgaaatagaacgatctctacgtatatgctacaac |
106 |
Q |
| |
|
|||||||| || || || |||||||| ||||||| || ||||||||| | ||||| || |||| ||||||||| | ||| || ||| |||||||||| || |
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|
| T |
1598903 |
gtgcaaccaaaaaacaatgtattgtttctagaacaagcgtgacacaaaatatactactataactagtgaaataaaccgaactttacatatatgctacgac |
1598804 |
T |
|
| Q |
107 |
acaagctacatagtaaaacaacatagtcaccaatatgtcatgtcttctccatgttgaatcatgcaaagttggatgaaatcaaataacaagtgacatcggt |
206 |
Q |
| |
|
||| |||||||||| | ||||||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||||||| ||| || |
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|
| T |
1598803 |
ctaagttacatagtaacaggacatagtcaacaatatgtcatgtcttctccatgttaaatcctgcaaagatggatgaaatcaagtaacaagtgatatcagt |
1598704 |
T |
|
| Q |
207 |
gcttctgaaggcatcaaatta---------cattcaaacatatttaactaggttcaagcttacctcaattattaactccactagaagctccttc------ |
291 |
Q |
| |
|
| ||||||| ||||||||||| ||||||||||||||||| |||| ||| ||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
1598703 |
gtttctgaaagcatcaaattagtgaatttacattcaaacatatttaatgtggtttaagattacctcaactataaactccactagtagctccttcgaattc |
1598604 |
T |
|
| Q |
292 |
attaatggatattgaaaatgcttgggaccatttcctcttttatgatgccggtacaatagaatcatcgagtatagggttccagaagcctctaggatcagac |
391 |
Q |
| |
|
||| |||||||| |||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| || | ||||||||||||||| ||| |||| |
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|
| T |
1598603 |
attgatggatatcgaaaatgcttcggaccatttcctcttttcagatgctggtacaatataatcatctaggaaagggttccagaagccctcgggactagac |
1598504 |
T |
|
| Q |
392 |
aaaacccagcttacttttgttggtggtcttgctaagttatggatggaacctttatcgtcttcccctattttgattttcttctgagaatcat |
482 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1598503 |
aaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctatcgtcttcccccgttttgattttcttctgagaatcat |
1598413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 212 - 321
Target Start/End: Original strand, 1294713 - 1294819
Alignment:
| Q |
212 |
tgaaggcatcaaattacattcaaacatatttaactaggttcaagcttacctcaattattaactccactagaagctccttcattaatggatattgaaaatg |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| | | ||||||| || |||||||||||| |||| ||||||||| |
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| T |
1294713 |
tgaaggcatcaaattacattcaaacatatttaacttggttcaagcttacctcaactctaaactccatcagtagctccttcattgatgg---ttgaaaatg |
1294809 |
T |
|
| Q |
312 |
cttgggacca |
321 |
Q |
| |
|
||| |||||| |
|
|
| T |
1294810 |
cttcggacca |
1294819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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