View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_70 (Length: 326)

Name: NF10151A_low_70
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_70
NF10151A_low_70
[»] chr2 (11 HSPs)
chr2 (206-314)||(6295433-6295541)
chr2 (6-59)||(19523308-19523361)
chr2 (123-169)||(5852474-5852519)
chr2 (123-169)||(11728147-11728192)
chr2 (123-169)||(30339993-30340038)
chr2 (123-169)||(30487495-30487540)
chr2 (123-169)||(36383462-36383507)
chr2 (123-169)||(36909869-36909914)
chr2 (123-169)||(40721771-40721816)
chr2 (123-169)||(44484682-44484727)
chr2 (129-169)||(5031923-5031962)
[»] chr7 (15 HSPs)
chr7 (123-169)||(47944982-47945028)
chr7 (123-169)||(47950412-47950458)
chr7 (123-169)||(33050183-33050228)
chr7 (123-169)||(2347085-2347130)
chr7 (123-169)||(2600560-2600605)
chr7 (123-169)||(4971290-4971335)
chr7 (123-169)||(11789717-11789762)
chr7 (123-169)||(28548247-28548292)
chr7 (123-169)||(29763830-29763875)
chr7 (123-169)||(30538626-30538671)
chr7 (123-169)||(30864443-30864488)
chr7 (123-169)||(37969931-37969976)
chr7 (123-169)||(44511139-44511184)
chr7 (123-169)||(48639409-48639454)
chr7 (124-168)||(37325846-37325889)
[»] chr1 (12 HSPs)
chr1 (8-59)||(43105216-43105267)
chr1 (123-170)||(35972830-35972876)
chr1 (123-166)||(48336464-48336506)
chr1 (123-169)||(6396327-6396372)
chr1 (123-169)||(12999848-12999893)
chr1 (123-169)||(41564906-41564951)
chr1 (123-169)||(42256460-42256505)
chr1 (128-169)||(21433432-21433472)
chr1 (124-169)||(23400016-23400060)
chr1 (6-59)||(40053017-40053070)
chr1 (6-58)||(43757698-43757750)
chr1 (123-167)||(50035563-50035606)
[»] chr8 (17 HSPs)
chr8 (123-169)||(5742683-5742728)
chr8 (128-171)||(10644833-10644875)
chr8 (123-169)||(21649194-21649239)
chr8 (123-169)||(27300346-27300391)
chr8 (123-169)||(28156203-28156248)
chr8 (123-169)||(32674258-32674303)
chr8 (123-169)||(35701853-35701898)
chr8 (123-169)||(35937538-35937583)
chr8 (123-169)||(41273515-41273560)
chr8 (124-169)||(22203242-22203286)
chr8 (124-169)||(37784401-37784445)
chr8 (9-58)||(38939102-38939151)
chr8 (129-169)||(1248253-1248292)
chr8 (125-169)||(20288533-20288576)
chr8 (125-169)||(21075162-21075205)
chr8 (123-171)||(37568640-37568687)
chr8 (130-170)||(43602456-43602495)
[»] chr6 (4 HSPs)
chr6 (123-169)||(3339525-3339570)
chr6 (130-169)||(28965873-28965911)
chr6 (128-169)||(25127864-25127904)
chr6 (126-170)||(2056782-2056825)
[»] chr3 (15 HSPs)
chr3 (123-169)||(11327108-11327153)
chr3 (123-169)||(54233494-54233539)
chr3 (6-59)||(16295575-16295628)
chr3 (124-167)||(38471644-38471686)
chr3 (123-169)||(2280177-2280222)
chr3 (123-169)||(8254027-8254072)
chr3 (123-169)||(14839071-14839116)
chr3 (123-169)||(16295464-16295509)
chr3 (123-169)||(32931944-32931989)
chr3 (123-169)||(36818956-36819001)
chr3 (127-169)||(48405410-48405451)
chr3 (128-169)||(29573387-29573427)
chr3 (123-168)||(44689793-44689837)
chr3 (124-169)||(48944737-48944781)
chr3 (128-168)||(47101523-47101562)
[»] scaffold0592 (1 HSPs)
scaffold0592 (6-59)||(1021-1074)
[»] scaffold0036 (1 HSPs)
scaffold0036 (6-59)||(54569-54622)
[»] chr4 (14 HSPs)
chr4 (6-59)||(33777005-33777058)
chr4 (124-169)||(35037609-35037653)
chr4 (123-169)||(3475869-3475914)
chr4 (123-169)||(5208353-5208398)
chr4 (123-169)||(26442416-26442461)
chr4 (123-169)||(29863551-29863596)
chr4 (123-169)||(31318753-31318798)
chr4 (123-169)||(55268027-55268072)
chr4 (124-169)||(1796366-1796410)
chr4 (124-169)||(7037511-7037555)
chr4 (128-169)||(51359821-51359861)
chr4 (130-170)||(169535-169574)
chr4 (129-169)||(8810571-8810610)
chr4 (123-167)||(43307395-43307438)
[»] chr5 (16 HSPs)
chr5 (130-170)||(7077375-7077414)
chr5 (123-166)||(5005105-5005148)
chr5 (123-169)||(1107981-1108026)
chr5 (123-169)||(3031834-3031879)
chr5 (123-169)||(9594478-9594523)
chr5 (123-169)||(9599754-9599799)
chr5 (123-169)||(14914372-14914417)
chr5 (123-169)||(18729315-18729360)
chr5 (123-169)||(28501592-28501637)
chr5 (123-169)||(29765830-29765875)
chr5 (123-169)||(30574403-30574448)
chr5 (123-169)||(39032630-39032675)
chr5 (124-169)||(3263535-3263579)
chr5 (128-169)||(18695318-18695358)
chr5 (124-169)||(25585483-25585527)
chr5 (129-169)||(42225798-42225837)
[»] scaffold0651 (1 HSPs)
scaffold0651 (123-169)||(4872-4917)
[»] scaffold0014 (1 HSPs)
scaffold0014 (123-169)||(145061-145106)
[»] scaffold0049 (1 HSPs)
scaffold0049 (130-171)||(72202-72242)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 6295433 - 6295541
Alignment:
Q  206 gttgaaattagattctcagtagtcgtcacaatagtggccactcgattaaaattaaaatgtttagattttgatttaataaaatttaaaaccaaagattgaa 305  Q
    |||||||||||||||||  |||||||||||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6295433 gttgaaattagattctctatagtcgtcacatcagtggccgctcgattaagattaaaatgtttagattttgatttaataaaatttaaaaccaaagattgaa 6295532  T
Q  306 atatatatt 314  Q
    |||||||||    
T  6295533 atatatatt 6295541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 19523308 - 19523361
Alignment:
Q  6 actattttggtacaatttctgagataaatttattgttctctctttttattggtc 59  Q
    |||||||||||||||||| ||  | || ||||||||||||||||||||||||||    
T  19523308 actattttggtacaatttttggtacaattttattgttctctctttttattggtc 19523361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 5852519 - 5852474
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||    
T  5852519 gttgtacaaaagttgtacaaaaatggtt-gtacaaatatcatttctc 5852474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 11728147 - 11728192
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  11728147 gttgtacaaaagttgtaccaaaatgg-ttgtacaaacatcatttctc 11728192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 30340038 - 30339993
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||    
T  30340038 gttgtacaaaagttgtacaaaaatggtt-gtacaaatatcatttctc 30339993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 30487495 - 30487540
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  30487495 gttgtacaaaagttgtcacaaattgg-ttgtacaaatatcatttctc 30487540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 36383507 - 36383462
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||    
T  36383507 gttgtacaaaagttgtcacaaaatc-tttgtacaaatatcatttctc 36383462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 36909869 - 36909914
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  36909869 gttgtccaaaagttgtcacaaaatgg-ttgtacaaatatcatttctc 36909914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 40721816 - 40721771
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||||    
T  40721816 gttgtacaaaagttgtaccaaaatgg-ctgtacaaatatcatttctc 40721771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 44484682 - 44484727
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||||    
T  44484682 gttgtacaaaaattgttacaaaatgg-ttgtacaaatatcatttctc 44484727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 5031962 - 5031923
Alignment:
Q  129 caaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  5031962 caaaagttgttacaaaatggtt-gtacaaatatcatttctc 5031923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 47945028 - 47944982
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  47945028 gttgtacaaaagttgtacaaaaatggtttgtacaaatatcatttctc 47944982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 47950458 - 47950412
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  47950458 gttgtacaaaagttgtacaaaaatggtttgtacaaatatcatttctc 47950412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 33050228 - 33050183
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  33050228 gttgtacaaaagttgtcacaaaatgg-ttgtacaaatatcatttctc 33050183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 2347085 - 2347130
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||||||    
T  2347085 gttgtaccaaagttgtcacaaaatgg-ttgtacaaatatcatttctc 2347130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 2600560 - 2600605
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  2600560 gttgtacaaaagttgtactaaaatgg-ttgtacaaatatcatttctc 2600605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 4971335 - 4971290
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  4971335 gttgtataaaagttgtcacaaaatggtt-gtacaaatatcatttctc 4971290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 11789717 - 11789762
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  11789717 gttgtacaaaagttgtactaaaatgg-ttgtacaaatatcatttctc 11789762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 28548247 - 28548292
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||||    
T  28548247 gttgtacaaaagttgtaccaaaatag-ttgtacaaatatcatttctc 28548292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 29763875 - 29763830
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||||    
T  29763875 gttgtacaaaagttatcacaaaatggtt-gtacaaatatcatttctc 29763830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 30538671 - 30538626
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  30538671 gttgtacaaaagttgtaccaaaattgtt-gtacaaatatcatttctc 30538626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 30864443 - 30864488
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  30864443 gttgtacaaaagttgtcacaaattgg-ttgtacaaatatcatttctc 30864488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 37969976 - 37969931
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  37969976 gttgtacaaaagttgtatcaaaatagtt-gtacaaatatcatttctc 37969931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 44511184 - 44511139
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||||    
T  44511184 gttgtacaaaagttgtcacaaaatgg-ttgtacgaatatcatttctc 44511139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 48639409 - 48639454
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  48639409 gttgtacaaaagttgtacaaaaatgg-ttgtacaaatatcatttctc 48639454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 37325846 - 37325889
Alignment:
Q  124 ttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttct 168  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  37325846 ttgtacaaaagttgtcacaaattgg-ttgtacaaatatcatttct 37325889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 43105267 - 43105216
Alignment:
Q  8 tattttggtacaatttctgagataaatttattgttctctctttttattggtc 59  Q
    |||||||||||||||| || || || ||||||||||||||||||||||||||    
T  43105267 tattttggtacaatttttgggacaactttattgttctctctttttattggtc 43105216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 35972830 - 35972876
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctcg 170  Q
    |||||||||||||||| ||||||||| ||| |||||||||||||||||    
T  35972830 gttgtacaaaagttgtcacaaaatgg-ttgaacaaatatcatttctcg 35972876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 48336464 - 48336506
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcattt 166  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  48336464 gttgtacaaaagttgtatcaaaatgg-ttgtacaaatatcattt 48336506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 6396372 - 6396327
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||||    
T  6396372 gttgtacaaaagttgtaccaaaatgg-ttgtaccaatatcatttctc 6396327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 12999848 - 12999893
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| | ||||||| ||||||||||||||||||||    
T  12999848 gttgtacaaaagttgttagaaaatgg-ttgtacaaatatcatttctc 12999893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 41564906 - 41564951
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  41564906 gttgtacaaaagttgtacaaaaatgg-ttgtacaaatatcatttctc 41564951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 42256505 - 42256460
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  42256505 gttgtaccaaagttgtcacaaaatggtt-gtacaaatatcatttctc 42256460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 21433432 - 21433472
Alignment:
Q  128 acaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  21433432 acaaaagttgttacaaaatggtt-gtacaaatatcatttctc 21433472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 23400016 - 23400060
Alignment:
Q  124 ttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||    
T  23400016 ttgtacaaaagttgtataaaaatggtt-gtacaaatatcatttctc 23400060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 40053070 - 40053017
Alignment:
Q  6 actattttggtacaatttctgagataaatttattgttctctctttttattggtc 59  Q
    |||||||||||||||| | ||||| || ||| |||||||||||||| |||||||    
T  40053070 actattttggtacaatctttgagacaactttgttgttctctcttttcattggtc 40053017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 43757750 - 43757698
Alignment:
Q  6 actattttggtacaatttctgagataaatttattgttctctctttttattggt 58  Q
    |||||||||||| ||||| ||||| || ||| |||||||||||||| ||||||    
T  43757750 actattttggtataatttttgagacaactttgttgttctctcttttcattggt 43757698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 50035563 - 50035606
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttc 167  Q
    |||||| ||||||||| ||||||||| ||||||||||||||||||    
T  50035563 gttgtataaaagttgtcacaaaatgg-ttgtacaaatatcatttc 50035606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 5742683 - 5742728
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  5742683 gttgtacaaaagttgtaccaaaatgg-ttgtacaaatatcatttctc 5742728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 10644833 - 10644875
Alignment:
Q  128 acaaaagttgtaacaaaatggtttgtacaaatatcatttctcga 171  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    
T  10644833 acaaaagttgttacaaaatggtt-gtacaaatatcatttctcga 10644875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 21649194 - 21649239
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  21649194 gttgtacaaaagttgtacaaaaatgg-ttgtacaaatatcatttctc 21649239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 27300391 - 27300346
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||    
T  27300391 gttgtacaaaagttgtacaaaaatggtt-gtacaaatatcatttctc 27300346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 28156248 - 28156203
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  28156248 gttgtacaaaaattgtaccaaaatggtt-gtacaaatatcatttctc 28156203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 32674258 - 32674303
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||| || |||||||| ||||||||||||||||||||    
T  32674258 gttgtacaaaagttataccaaaatgg-ttgtacaaatatcatttctc 32674303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 35701853 - 35701898
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  35701853 gttgtacaaaagttgtacaaaaatgg-ttgtacaaatatcatttctc 35701898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 35937538 - 35937583
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  35937538 gttgtccaaaagttgttacaaaatgg-ttgtacaaatatcatttctc 35937583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 41273560 - 41273515
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||| || |||||||||||||||||||||    
T  41273560 gttgtacaaaagttgtcacaaattg-tttgtacaaatatcatttctc 41273515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 22203242 - 22203286
Alignment:
Q  124 ttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||    
T  22203242 ttgtacaaaagttgtacaaaaatggtt-gtacaaatatcatttctc 22203286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 37784401 - 37784445
Alignment:
Q  124 ttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||    
T  37784401 ttgtacaaaagttataccaaaatggtt-gtacaaatatcatttctc 37784445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 38939102 - 38939151
Alignment:
Q  9 attttggtacaatttctgagataaatttattgttctctctttttattggt 58  Q
    ||||||||||||||| |||||||| ||| |||||||||||| | ||||||    
T  38939102 attttggtacaatttttgagataactttgttgttctctcttctcattggt 38939151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 1248292 - 1248253
Alignment:
Q  129 caaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  1248292 caaaagttgtaagaaaatggtt-gtacaaatatcatttctc 1248253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 20288576 - 20288533
Alignment:
Q  125 tgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||    
T  20288576 tgtacaaaagttgtcacaaattggtt-gtacaaatatcatttctc 20288533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 21075205 - 21075162
Alignment:
Q  125 tgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||    
T  21075205 tgtacaaaagttgtcacaaattggtt-gtacaaatatcatttctc 21075162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 37568640 - 37568687
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctcga 171  Q
    |||||| |||| |||| |||||||| |||||||||||||||||||||||    
T  37568640 gttgtataaaaattgtcacaaaatg-tttgtacaaatatcatttctcga 37568687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 43602456 - 43602495
Alignment:
Q  130 aaaagttgtaacaaaatggtttgtacaaatatcatttctcg 170  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  43602456 aaaagttgtagcaaaatggtt-gtacaaatatcatttctcg 43602495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 3339525 - 3339570
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  3339525 gttgtacaaaagttgtcacaaaatgg-ttgtacaaatatcatttctc 3339570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 28965873 - 28965911
Alignment:
Q  130 aaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  28965873 aaaagttgtaacaaaatgg-ttgtacaaatatcatttctc 28965911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 25127864 - 25127904
Alignment:
Q  128 acaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  25127864 acaaaagttgttacaaaatggtt-gtacaaatatcatttctc 25127904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 2056825 - 2056782
Alignment:
Q  126 gtacaaaagttgtaacaaaatggtttgtacaaatatcatttctcg 170  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||    
T  2056825 gtacaaaagttgtcacaaattggtt-gtacaaatatcatttctcg 2056782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 11327153 - 11327108
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  11327153 gttgtacaaaagttgtcacaaaatgg-ttgtacaaatatcatttctc 11327108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 54233494 - 54233539
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  54233494 gttgtacaaaagttgtaaaaaaatgg-ttgtacaaatatcatttctc 54233539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 16295628 - 16295575
Alignment:
Q  6 actattttggtacaatttctgagataaatttattgttctctctttttattggtc 59  Q
    ||||||||||||||| || ||||| || ||| ||||||||||||||||||||||    
T  16295628 actattttggtacaacttttgagacaactttgttgttctctctttttattggtc 16295575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 38471686 - 38471644
Alignment:
Q  124 ttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttc 167  Q
    |||||||||||||||| |||||||| ||||||||||||||||||    
T  38471686 ttgtacaaaagttgtaccaaaatgg-ttgtacaaatatcatttc 38471644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 2280222 - 2280177
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||    
T  2280222 gttgtacaaaagttgtactaaaatggtt-gtacaaatatcatttctc 2280177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 8254072 - 8254027
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  8254072 gttgtaccaaagttgtcacaaaatggtt-gtacaaatatcatttctc 8254027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 14839071 - 14839116
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  14839071 gttgtacaaaagttgtacaaaaatgg-ttgtacaaatatcatttctc 14839116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 16295509 - 16295464
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||||    
T  16295509 gttgtacaaaagttgtatcaaattggtt-gtacaaatatcatttctc 16295464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 32931944 - 32931989
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  32931944 gttgtacaaaagttgtcacaaattgg-ttgtacaaatatcatttctc 32931989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 36819001 - 36818956
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  36819001 gttgtacaaaagttgtcacaaattggtt-gtacaaatatcatttctc 36818956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 48405451 - 48405410
Alignment:
Q  127 tacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  48405451 tacaaaagttgtcacaaaatggtt-gtacaaatatcatttctc 48405410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 29573387 - 29573427
Alignment:
Q  128 acaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  29573387 acaaaagttgttacaaaatggtt-gtacaaatatcatttctc 29573427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 44689837 - 44689793
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttct 168  Q
    |||||||||||||||||  ||||||| |||||||||||||||||||    
T  44689837 gttgtacaaaagttgtacaaaaatgg-ttgtacaaatatcatttct 44689793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 48944737 - 48944781
Alignment:
Q  124 ttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||| | ||||||||| ||||||||||||||||||    
T  48944737 ttgtacaaaagttgttagaaaatggtt-gtacaaatatcatttctc 48944781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 47101562 - 47101523
Alignment:
Q  128 acaaaagttgtaacaaaatggtttgtacaaatatcatttct 168  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  47101562 acaaaagttgtcacaaaatggtt-gtacaaatatcatttct 47101523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 1074 - 1021
Alignment:
Q  6 actattttggtacaatttctgagataaatttattgttctctctttttattggtc 59  Q
    ||||||||||||||| || |||||||| ||| |||||||||||||| |||||||    
T  1074 actattttggtacaacttttgagataactttgttgttctctcttttcattggtc 1021  T

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Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 54569 - 54622
Alignment:
Q  6 actattttggtacaatttctgagataaatttattgttctctctttttattggtc 59  Q
    |||||||||||||||| | ||||| || ||| ||||||||||||||||||||||    
T  54569 actattttggtacaatctttgagacaactttgttgttctctctttttattggtc 54622  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 33777058 - 33777005
Alignment:
Q  6 actattttggtacaatttctgagataaatttattgttctctctttttattggtc 59  Q
    |||||||||||||||||| || |||||  || ||||||||||||||||||||||    
T  33777058 actattttggtacaatttttgggataaccttgttgttctctctttttattggtc 33777005  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 35037653 - 35037609
Alignment:
Q  124 ttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||    
T  35037653 ttgtacaaaagttgtatcaaaatgg-ttgtacaaatatcatttctc 35037609  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 3475914 - 3475869
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||||    
T  3475914 gttgtacaaaagttgtcataaaatggtt-gtacaaatatcatttctc 3475869  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 5208353 - 5208398
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  5208353 gttgtacaaaagttgtcacaaattgg-ttgtacaaatatcatttctc 5208398  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 26442416 - 26442461
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  26442416 gttgtgcaaaagttgtaccaaaatgg-ttgtacaaatatcatttctc 26442461  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 29863596 - 29863551
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||    
T  29863596 gttgtacaaaagttataccaaaatggtt-gtacaaatatcatttctc 29863551  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 31318798 - 31318753
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  31318798 gttgtacaaaaattgtaccaaaatggtt-gtacaaatatcatttctc 31318753  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 55268027 - 55268072
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  55268027 gttgtacaaaagttgtcacaaattgg-ttgtacaaatatcatttctc 55268072  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 1796410 - 1796366
Alignment:
Q  124 ttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  1796410 ttgtacaaaagttgtcacaaattggtt-gtacaaatatcatttctc 1796366  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 7037511 - 7037555
Alignment:
Q  124 ttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  7037511 ttgtacaaaagttgtcacaaattggtt-gtacaaatatcatttctc 7037555  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 51359821 - 51359861
Alignment:
Q  128 acaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  51359821 acaaaagttgtcacaaaatggtt-gtacaaatatcatttctc 51359861  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 169535 - 169574
Alignment:
Q  130 aaaagttgtaacaaaatggtttgtacaaatatcatttctcg 170  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  169535 aaaagttgtcacaaaatggtt-gtacaaatatcatttctcg 169574  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 8810610 - 8810571
Alignment:
Q  129 caaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  8810610 caaaagttgtaagaaaatggtt-gtacaaatatcatttctc 8810571  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 43307395 - 43307438
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttc 167  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||    
T  43307395 gttgtacaaaagttgtacaaaaatgg-ttgtacaaatatcatttc 43307438  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 7077375 - 7077414
Alignment:
Q  130 aaaagttgtaacaaaatggtttgtacaaatatcatttctcg 170  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  7077375 aaaagttgtaacaaaatgg-ttgtacaaatatcatttctcg 7077414  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 5005148 - 5005105
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcattt 166  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||    
T  5005148 gttgtacaaatgttgtaccaaaatggtttgtgcaaatatcattt 5005105  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 1108026 - 1107981
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||    
T  1108026 gttgtacaaaagttgtaacaaaatag-tcgtacaaatatcatttctc 1107981  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 3031879 - 3031834
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||    
T  3031879 gttgtacaaaagttgtacaaaaatggtt-gtacaaatatcatttctc 3031834  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 9594523 - 9594478
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  9594523 gttgtacaaaagttgtcacaaattggtt-gtacaaatatcatttctc 9594478  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 9599754 - 9599799
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  9599754 gttgtacaaaagttgtcacaaattgg-ttgtacaaatatcatttctc 9599799  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 14914417 - 14914372
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  14914417 gttgtccaaaagttgtcacaaaatggtt-gtacaaatatcatttctc 14914372  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 18729315 - 18729360
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  18729315 gttgtacaaaagttgtacaaaaatgg-ttgtacaaatatcatttctc 18729360  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 28501637 - 28501592
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||||||    
T  28501637 gttgtacaaaaattgtcacaaaatggtt-gtacaaatatcatttctc 28501592  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 29765875 - 29765830
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||    
T  29765875 gttgtacaaaagttgtactaaaatggtt-gtacaaatatcatttctc 29765830  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 30574403 - 30574448
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  30574403 gttgtacaaaagttgtcacaaattgg-ttgtacaaatatcatttctc 30574448  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 39032630 - 39032675
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  39032630 gttgtacaaaagttgtacaaaaatgg-ttgtacaaatatcatttctc 39032675  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 3263535 - 3263579
Alignment:
Q  124 ttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  3263535 ttgtacaaaagttgtcacaaattggtt-gtacaaatatcatttctc 3263579  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 18695358 - 18695318
Alignment:
Q  128 acaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  18695358 acaaaagttgttacaaaatggtt-gtacaaatatcatttctc 18695318  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 25585483 - 25585527
Alignment:
Q  124 ttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||    
T  25585483 ttgtacaaaagttgtacaaaaatggtt-gtacaaatatcatttctc 25585527  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 42225798 - 42225837
Alignment:
Q  129 caaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  42225798 caaaagttgttacaaaatggttt-tacaaatatcatttctc 42225837  T

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Target: scaffold0651 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 4872 - 4917
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  4872 gttgtacaaaaattgtaccaaaatgg-ttgtacaaatatcatttctc 4917  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 145106 - 145061
Alignment:
Q  123 gttgtacaaaagttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||    
T  145106 gttgtacaaaagttgtacaaaaatggtt-gtacaaatatcatttctc 145061  T

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Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 72202 - 72242
Alignment:
Q  130 aaaagttgtaacaaaatggtttgtacaaatatcatttctcga 171  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  72202 aaaagttgttacaaaatggtt-gtacaaatatcatttctcga 72242  T

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