View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151A_low_71 (Length: 325)
Name: NF10151A_low_71
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_71 |
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| [»] scaffold0889 (1 HSPs) |
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| [»] scaffold0870 (1 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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Alignment Details
Target: scaffold0889 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 4277 - 3962
Alignment:
| Q |
1 |
atgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagcatgtgcatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4277 |
atgtggagctatttatagtttaacattgcacatggttcatatttgctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagcatgtgcatt |
4178 |
T |
|
| Q |
101 |
ggagcacattaatttattggttataatattgatgacaactgataaataaaataagcagtttaagtttgccaatttttgttgcattatgttactgacttca |
200 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4177 |
ggaacacattaatttattagttataatattgatgacaactgataaataaaataagcagtttaagtttgccaatgtttgttgcattatgttactgacttca |
4078 |
T |
|
| Q |
201 |
tgttgtctattcatgacttcctacacctacactaaataacaataattaatttaaaggagaacatgtttcttatattaaatatataaacaaacatcaattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
4077 |
tgttgtctattcatgacttcctacacctacactaaataacaataattaatttaaaggagaacatgtttctcatattaaatatata----aacatcaattt |
3982 |
T |
|
| Q |
301 |
aaaggagaacgcatgtttct |
320 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
3981 |
aaaggagaacgcgtgtttct |
3962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 4481 - 4166
Alignment:
| Q |
1 |
atgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagcatgtgcatt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4481 |
atgtggagctatttatagtttaacattgcacatggttcatatttgctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagcatgtgcatt |
4382 |
T |
|
| Q |
101 |
ggagcacattaatttattggttataatattgatgacaactgataaataaaataagcagtttaagtttgccaatttttgttgcattatgttactgacttca |
200 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4381 |
ggaacacattaatttattagttataatattgatgacaactgataaataaaataagcagtttaagtttgccaatgtttgttgcattatgttactgacttca |
4282 |
T |
|
| Q |
201 |
tgttgtctattcatgacttcctacacctacactaaataacaataattaatttaaaggagaacatgtttcttatattaaatatataaacaaacatcaattt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
4281 |
tgttgtctattcatgacttcctacacctacactaaataacaataattaatttaaaggagaacatgtttctcatattaaatatata----aacatcaattt |
4186 |
T |
|
| Q |
301 |
aaaggagaacgcatgtttct |
320 |
Q |
| |
|
|||||||||||| ||||||| |
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| T |
4185 |
aaaggagaacgcgtgtttct |
4166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 28580547 - 28580863
Alignment:
| Q |
1 |
atgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctact-gaatgattgaaggtcaaaatatgtatgcagcatgtgcat |
99 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||| ||||||||||| |||||||||||||| | || |||||||||||| ||||||||||| |||||||| |
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| T |
28580547 |
atgtagagctatttatagcataacatttcacacggttcatatttgttcttttgagctacttgtat-attgaaggtcaacatatgtatgcat-atgtgcat |
28580644 |
T |
|
| Q |
100 |
tggagcacattaatttattg-gttataatattgatgacaactgataaataaaataagcagtttaagtttg--ccaatttttgttgcattatgtt-actga |
195 |
Q |
| |
|
|| | |||||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||||||| | || |||||||||||||||| ||| | |
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| T |
28580645 |
tgtaacacattaatttattcagttataatattgatggcagctgataaataaaatagacagtttaagtttgaaacgatgtttgttgcattatgttaactca |
28580744 |
T |
|
| Q |
196 |
cttcatgttgtctattcatgacttcctacacctacactaaataacaataattaatttaaaggagaacatgtttcttatattaaatatataaacaaacatc |
295 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28580745 |
cttcatgttgtctattcatgactt------tctactctaaataacaataattaatttaaaggagaacatgtttcttatattaaatatataaacaaaaatt |
28580838 |
T |
|
| Q |
296 |
aatttaaaggagaacgcatgtttct |
320 |
Q |
| |
|
||||||||||||||| ||||||||| |
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| T |
28580839 |
aatttaaaggagaacacatgtttct |
28580863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 286
Target Start/End: Original strand, 28586731 - 28586990
Alignment:
| Q |
24 |
cattgcacatggttcatattt-tctctt-ttgagctactgaatgattgaaggtcaaaatatgtatgcagcatgtgcat--tggagcacattaatttattg |
119 |
Q |
| |
|
||||||| ||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||||||| ||||| || | ||||| |||||||| |
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|
| T |
28586731 |
cattgcatatggttcatatatgtcttttgttgagctactggctgattgaaggtcaaaatatgtatgcagcatatgcatattgtaacacataaatttattt |
28586830 |
T |
|
| Q |
120 |
g-ttataatattgatgacaactgataaataaaataagcagtttaagtttgccaatttttgttgcattatgttactgacttcatgttgtctattcatgact |
218 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||||||| |||||||| ||||||||| |
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| T |
28586831 |
aattataatattggtggatactgataaataaaataagcagttttagtttgccaatgtttgtttaattatgttgctgacttgctgttgtctgttcatgact |
28586930 |
T |
|
| Q |
219 |
tcctacacctacactaaataacaataattaatttaaaggagaacatgtttcttatattaaatatataa |
286 |
Q |
| |
|
| | || ||||||| |||||| ||||||||||| |||||| |||||||||||| ||||||||| |
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|
| T |
28586931 |
t--ttca---acactaagtaacaaaaattaatttaa---agaacaagtttcttatatttaatatataa |
28586990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 28575458 - 28575592
Alignment:
| Q |
1 |
atgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagcatgtgcatt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||| |
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|
| T |
28575458 |
atgttgagctatttatagtttaacattgcactcgtttcatatttgctcttttgagctactggtagattgaaggtcagcatgtgtatgcagcatgtgcatt |
28575557 |
T |
|
| Q |
101 |
ggagcacattaattta-ttggttataatattgatg |
134 |
Q |
| |
|
| | |||||||||||| || ||||||||||||||| |
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|
| T |
28575558 |
gtaacacattaatttatttagttataatattgatg |
28575592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 28568724 - 28568841
Alignment:
| Q |
10 |
tatttatagtttaacattgcacatggttcatattttctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagc--atgtgcattggagcac |
107 |
Q |
| |
|
||||||||| | |||||||||||| ||| |||||| | ||||||||||||||||||||||||||| |||||||||| || ||||| |||| | || |
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|
| T |
28568724 |
tatttatagctgaacattgcacatagttgatatttgttagtttgagctactgaatgattgaaggtcagcatatgtatgctgcatatgtgtattgtaagac |
28568823 |
T |
|
| Q |
108 |
attaatttattggttata |
125 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
28568824 |
attaatttattagttata |
28568841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 28575591 - 28575690
Alignment:
| Q |
180 |
tgcattatgttactgacttcatgttgtctattcatgacttcctacacctacactaaataacaata-----attaatttaaaggagaacatgtttcttata |
274 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| | || |||||||||||||| | ||||||||||||||||||||||||||| || |
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|
| T |
28575591 |
tgcattatgtcgctgacttcatgttgtctattcatgactt--ttca---acactaaataacaaaacaaatattaatttaaaggagaacatgtttctttta |
28575685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 26316845 - 26316889
Alignment:
| Q |
238 |
aacaataattaatttaaaggagaacatgtttcttatattaaatat |
282 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26316845 |
aacattaattaatttaaaggagaacatgtttcttatgttaaatat |
26316889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 28569073 - 28569116
Alignment:
| Q |
233 |
taaataacaataattaatttaaaggagaacatgtttcttatatt |
276 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28569073 |
taaataacaacgattaatttaaaggagaacatgtttcttatatt |
28569116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 2991 - 2872
Alignment:
| Q |
1 |
atgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagc--atgtgca |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || ||||| | ||||| | ||||||||||||||||||||| |||||||||| || ||||| | |
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|
| T |
2991 |
atgtggagctatttatagtttaacattgcacacgatttttatttgttattttgggttactgaatgattgaaggtcaacatatgtatgctgcatatgtgta |
2892 |
T |
|
| Q |
99 |
ttggagcacattaatttatt |
118 |
Q |
| |
|
||| | |||||||||||||| |
|
|
| T |
2891 |
ttgtaacacattaatttatt |
2872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 2991 - 2872
Alignment:
| Q |
1 |
atgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagc--atgtgca |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || ||||| | ||||| | ||||||||||||||||||||| |||||||||| || ||||| | |
|
|
| T |
2991 |
atgtggagctatttatagtttaacattgcacacgatttttatttgttattttgggttactgaatgattgaaggtcaacatatgtatgctgcatatgtgta |
2892 |
T |
|
| Q |
99 |
ttggagcacattaatttatt |
118 |
Q |
| |
|
||| | |||||||||||||| |
|
|
| T |
2891 |
ttgtaacacattaatttatt |
2872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5893026 - 5893085
Alignment:
| Q |
1 |
atgtggagctatttatagtttaacattgcacatggttcatattttctcttttgagctact |
60 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
5893026 |
atgtggagctatttattgttgaacattgcacacggttcatatttgctcttttgagctact |
5893085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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