View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151A_low_72 (Length: 321)
Name: NF10151A_low_72
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_72 |
 | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 35029015 - 35028712
Alignment:
| Q |
6 |
ccttatgtagcttggtttgttgtttagtgtgttgatcatgtggaatgaacggtatgaaagattgttcaatagcacaagtagttccattgat---ttgttg |
102 |
Q |
| |
|
||||||| |||| | || |||| ||||||||| || ||| |||||||| ||| || |||||||||||||||||||| |||| ||||||||| |||||| |
|
|
| T |
35029015 |
ccttatgcagctggtttggttgcttagtgtgtggaccatttggaatgatcggaatcaaagattgttcaatagcacaggtagctccattgatcagttgttg |
35028916 |
T |
|
| Q |
103 |
gatagagttaagctgtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgg |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35028915 |
gatagagttaagcggtattccctttggtggctaaaagctaacaatgttgtttttgtttttgactcccaactgtggtggtcgagtcctcttacctgtttgg |
35028816 |
T |
|
| Q |
203 |
gactggcctaattttgtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagtt |
302 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35028815 |
gactgacctaattttgcttgaccctgtatatttgtaaatactttggactttcttggtacatcttgtactaggaagagttcgtgatttgttaatataagtt |
35028716 |
T |
|
| Q |
303 |
ccat |
306 |
Q |
| |
|
|||| |
|
|
| T |
35028715 |
ccat |
35028712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 124 - 306
Target Start/End: Complemental strand, 30426111 - 30425923
Alignment:
| Q |
124 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatt------tt |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||||| |||||| | ||||||| ||| | |||||| || |
|
|
| T |
30426111 |
ctttggtggctaaaagctaataatgttgtttttgtttttggttcccaactgttgtggtcaagtcctttggtttgtttggaacttggctaatttttgtctt |
30426012 |
T |
|
| Q |
218 |
gtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
| |||||| |||||||||||||||||||||| ||| ||| |||||||| |||| ||| | || ||| |||||||||||||||||||| |
|
|
| T |
30426011 |
gattgactttgtatatttgtaaatactttgggcttccttagtacatcttgtacttggaggtgtctgtgttttgttaatataagttccat |
30425923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 124 - 306
Target Start/End: Complemental strand, 12331528 - 12331345
Alignment:
| Q |
124 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
222 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| | || ||||||||||| ||||| | | |||||||| || | |||| |||| ||| |
|
|
| T |
12331528 |
ctttggtggctaaaagctcataatgttgtttttgtttttggttttcatttgtggtggtcaagtcccttggcttgtttggggctaggctaatttttccttg |
12331429 |
T |
|
| Q |
223 |
actctgtatatttgtaaatact-ttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
| | ||||||||||| |||||| ||| ||| |||| ||| |||| |||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
12331428 |
attatgtatatttgtcaatactcttgagcttccttggtacgtcttgtactaggaagtgtccgt-atttgttaatataagttccat |
12331345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 5802381 - 5802438
Alignment:
| Q |
124 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggt |
181 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | | ||| |||||||||| |
|
|
| T |
5802381 |
ctttggtggctaaaagctaataatgttgtttttgtttttagtttccatttgtggtggt |
5802438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 5803387 - 5803520
Alignment:
| Q |
174 |
gtggtggtcgagtcctcttacctgtttgggactggcctaatttt-gtttgactctgtatatttgtaaatactttggactttcttgatacatcttttacta |
272 |
Q |
| |
|
||||||||| |||||| | | ||||||||||| | |||||||| |||||||| ||||||||||||||| ||| || | | |||| |||||||| |||| |
|
|
| T |
5803387 |
gtggtggtcaagtcctttggcttgtttgggacttggctaatttttgtttgactttgtatatttgtaaatgcttggggcctccttggtacatcttgtactt |
5803486 |
T |
|
| Q |
273 |
ggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
||| | || ||| ||||||||||| | |||||| |
|
|
| T |
5803487 |
ggaggtgtctgtggtttgttaatattatttccat |
5803520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 306
Target Start/End: Complemental strand, 31483197 - 31482896
Alignment:
| Q |
8 |
ttatgtagcttggtttgttgtttagtgtgttgatcatgtggaatgaacggtatgaaagattgttcaatagcacaagtagttccattgat---ttgttgga |
104 |
Q |
| |
|
||||| |||||| || |||| ||||||||| |||||| |||||||| || || |||||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
31483197 |
ttatgcagcttgtttggttgcttagtgtgtggatcatttggaatgactggaatcaaagattgttcaatagcacaggtagctccattgatcagttgttgga |
31483098 |
T |
|
| Q |
105 |
tagagttaagctgtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttggga |
204 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31483097 |
tagagttaagcggtattccctttggtggctaaaagctaacaatgctgtttttgtttttgcttcccaattgtggtggtcgagtcctcttacctgtttggaa |
31482998 |
T |
|
| Q |
205 |
ctggcctaattttgtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttcc |
304 |
Q |
| |
|
||| |||||||| |||||| |||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31482997 |
ttggtctaattttatttgaccctgtatatttgtaaatacgttggactttcttggtacatcttgtaccaggaagagttcgtgatttgttaatataagttcc |
31482898 |
T |
|
| Q |
305 |
at |
306 |
Q |
| |
|
|| |
|
|
| T |
31482897 |
at |
31482896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 97 - 245
Target Start/End: Original strand, 6995421 - 6995570
Alignment:
| Q |
97 |
ttgttggatagagttaagctgtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacct |
196 |
Q |
| |
|
|||||||||| ||| || | ||| ||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||| |||| | | | | |
|
|
| T |
6995421 |
ttgttggataaagtaaaacggtactccctttggtggctaaaagctaataatgttgtttttgtttttggtttccatttgtggtggtcaagtcatttggctt |
6995520 |
T |
|
| Q |
197 |
gtttgggactggcctaattttgt-ttgactctgtatatttgtaaatactt |
245 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||||||||||||||||| |
|
|
| T |
6995521 |
gtttgggacttcgctaattttttattgactctgtatatttgtaaatactt |
6995570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 97 - 306
Target Start/End: Original strand, 47094512 - 47094721
Alignment:
| Q |
97 |
ttgttggatagagttaagctgtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacct |
196 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47094512 |
ttgttggatagagttaagcgatattctctttggtggctaaaagctaacaatgttgtttttgtttttggctctcaattgtggtggtcgagtcctcttacct |
47094611 |
T |
|
| Q |
197 |
gtttgggactggcctaattttgtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaata |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47094612 |
gtttgggactggcctaattttgtttgactctgtatatttgtaaatactttggacattcttagtacatcttgtactaggaagagttcgtgatttgttaata |
47094711 |
T |
|
| Q |
297 |
taagttccat |
306 |
Q |
| |
|
|||||||||| |
|
|
| T |
47094712 |
taagttccat |
47094721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 48117144 - 48116862
Alignment:
| Q |
24 |
gttgtttagtgtgttgatcatgtggaatgaacggtatgaaagattgttcaatagcacaagtagttccattgat---ttgttggatagagttaagctgtat |
120 |
Q |
| |
|
|||| ||||||||| |||||| |||||||| || | |||| |||||||| | ||| |||| ||||||||| ||| |||| | ||| |||| |||| |
|
|
| T |
48117144 |
gttgcttagtgtgtggatcatttggaatgaccgtagtcaaaggttgttcaacaatacaggtagctccattgatcagttgctggacaaagtcaagcggtat |
48117045 |
T |
|
| Q |
121 |
tccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatt----- |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| |||||| | ||||||||||| |||||| |
|
|
| T |
48117044 |
tccctttggtggctaaaagctaataatgttgtttttgtttttggttcccaactgtggtggtcaagtcct-tggtttgtttgggacttcgctaatttttgt |
48116946 |
T |
|
| Q |
216 |
-ttgtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatata |
298 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| ||| ||||||||||||| |||| ||| | || |||| |||||||||||| |
|
|
| T |
48116945 |
cttgattgactttgtatatttgtaaatactttgggcttccttgatacatcttgtacttggaggtgtccgtgttttgttaatata |
48116862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 124 - 306
Target Start/End: Original strand, 30822205 - 30822389
Alignment:
| Q |
124 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
222 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| | |||||||||||||| ||||| | | |||||||| || | |||| ||||||||| |
|
|
| T |
30822205 |
ctttggtggctaaaagctcatgatgttgtttttgtttttgagtttcaattgtggtggtcaagtcccttggcttgtttggggctaggctaatttttgtttg |
30822304 |
T |
|
| Q |
223 |
actctgtatatttgtaaatactttgga-ctttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
| |||||||||||||||||||| || ||| | || |||||||| |||| ||| | | |||| |||||||||||||||||||| |
|
|
| T |
30822305 |
tttatgtatatttgtaaatacttttgagcttccctggtacatcttgtactcggaggtgcccgtggtttgttaatataagttccat |
30822389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 36953102 - 36952915
Alignment:
| Q |
125 |
tttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatttt------g |
218 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||||| |||||| || ||| ||||||||| ||| || | ||||||||||| | ||||||| | |
|
|
| T |
36953102 |
tttgatggctaaaagttaataatgttgtttttggttttggttctcaactgtggtggttaagtactttggtttgtttgggacttggttaatttttgtcttg |
36953003 |
T |
|
| Q |
219 |
tttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
|| ||| |||||||||||||||||||||| ||| ||||||| ||||| |||| || | || |||| ||||||||||||| |||||| |
|
|
| T |
36953002 |
attaactttgtatatttgtaaatactttgggcttccttgatatatcttatacttagaggtgtccgtgttttgttaatataaattccat |
36952915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 73 - 306
Target Start/End: Complemental strand, 53656515 - 53656278
Alignment:
| Q |
73 |
aatagcacaagtagttccattgat---ttgttggatagagttaagctgtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctccc |
169 |
Q |
| |
|
||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53656515 |
aatagcacaggtagctccattgatcagttgttggatagagttaagcggtattccctttggtggctaaaagcta-caatgttgtttttgtttttggctccc |
53656417 |
T |
|
| Q |
170 |
aattgtggtggtcgagtcctcttacctgtttgggactggcctaattttgtttgactctgtatatttgt--aaatactttggactttcttgatacatcttt |
267 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
53656416 |
aactgtggtggtcgagtcctcttacctgtttgggactggcctaattttgtttgtctctgtatatttgtaaaaatactttggactttcttggtacatcttg |
53656317 |
T |
|
| Q |
268 |
tactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53656316 |
tactaggaagagttcgtgatttgttaatatatgttccat |
53656278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 52251471 - 52251768
Alignment:
| Q |
6 |
ccttatgtagcttggtttgttgtttagtgtgttgatcatgtggaatgaacggtatgaaagattgttcaatagcacaagtagttccattgat---ttgttg |
102 |
Q |
| |
|
||||||| |||||| || | || ||||||||| |||||| |||||||| ||| || |||||||||||||||||||| |||| ||||||||| |||||| |
|
|
| T |
52251471 |
ccttatgcagcttgtttggctgcttagtgtgtggatcatttggaatgaccggaatcaaagattgttcaatagcacaggtagctccattgatcagttgttg |
52251570 |
T |
|
| Q |
103 |
gatagagttaagctgtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgg |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
52251571 |
gatagagttaagcggtattccctttggtggctaaa------caatgttgtttttgtttttggttcccaattgtggtggtcgagtcctcttaccattttgg |
52251664 |
T |
|
| Q |
203 |
gactggcctaattttgtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagtt |
302 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
52251665 |
gattggcctaattttgtttgactctgtatatttgtaaatactttggactttcttgatacatcttgtactcaaaagagttcgcattttgttaatataagtt |
52251764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 121 - 306
Target Start/End: Original strand, 19548945 - 19549131
Alignment:
| Q |
121 |
tccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgt |
219 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||| ||||| | | ||||||||||| | |||| |||||| |
|
|
| T |
19548945 |
tccctttggtggctaaaagctaataatgttgtttttgtttttggtttccatttgtggtggtcatgtcctttggcttgtttgggacttggctaatttttgt |
19549044 |
T |
|
| Q |
220 |
ttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
||||| ||||||||||||||||||| || | | |||| |||||||| |||| ||| | || |||| |||||||||||||||||||| |
|
|
| T |
19549045 |
ttgaccatgtatatttgtaaatacttggggcctccttggtacatcttgtacttggaggtgtccgtggtttgttaatataagttccat |
19549131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 306
Target Start/End: Complemental strand, 17699908 - 17699724
Alignment:
| Q |
124 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
222 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||||||||| | |||||||||||||| | ||| | | |||||||| || | |||| ||||||||| |
|
|
| T |
17699908 |
ctttggtggctaaaagctcataatgttatttttgtttttgggtttcaattgtggtggtcaaatcccttggcttgtttggggctaggctaatttttgtttg |
17699809 |
T |
|
| Q |
223 |
actctgtatatttgtaaatactttgga-ctttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
| |||||||||||||||||||| || ||| | || |||||||| ||| | | | | ||||| |||||||||||||||||||| |
|
|
| T |
17699808 |
tttatgtatatttgtaaatacttttgagcttccctggtacatcttgcactggaaggtgctcgtggtttgttaatataagttccat |
17699724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 123 - 306
Target Start/End: Complemental strand, 2250053 - 2249870
Alignment:
| Q |
123 |
cctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaattttgtttg |
222 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2250053 |
cctttggtggctaaaagctaataatgttgtttttgtttttggttcccaattgtggtggtcgagtcctcttacctgtttgggactgacctaattttgtttg |
2249954 |
T |
|
| Q |
223 |
actctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
2249953 |
actctgtatatttgtaaatactttggattttcttggtacatcttgtacttggaagagttcgtaatttgttaatacaagttccat |
2249870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 124 - 302
Target Start/End: Original strand, 9725149 - 9725327
Alignment:
| Q |
124 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
222 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||| | |||||||||||||| ||||| | | |||||||| || | |||| ||||||||| |
|
|
| T |
9725149 |
ctttgttggctaaaagctcataatgttgtttttgtttttggttttcaattgtggtggtcaagtcccttggcttgtttggggctaggctaatttttgtttg |
9725248 |
T |
|
| Q |
223 |
actctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagtt |
302 |
Q |
| |
|
| | ||||||||||| |||||| | || ||| || |||||||| |||||||||| || |||| ||||| |||||||||| |
|
|
| T |
9725249 |
attatgtatatttgtcaatactcttgagcttcctggtacatcttgtactaggaagtgtccgtg-tttgtgaatataagtt |
9725327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 21076840 - 21076738
Alignment:
| Q |
83 |
gtagttccattgat---ttgttggatagagttaagctgtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtg |
179 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||| ||| || ||||||||||||||||||| ||||| ||||||| | ||| | ||||||||||| |
|
|
| T |
21076840 |
gtagttccattgatcaattgttggataaagtaaagcggtactcactttggtggctaaaagctagtaatgtcatttttgtctatggttttcaattgtggtg |
21076741 |
T |
|
| Q |
180 |
gtc |
182 |
Q |
| |
|
||| |
|
|
| T |
21076740 |
gtc |
21076738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 124 - 306
Target Start/End: Original strand, 25019784 - 25019967
Alignment:
| Q |
124 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatttt-gtttg |
222 |
Q |
| |
|
|||||||||||||||| | | |||||||||||||||||||| | ||||||||||||||| |||||| | || ||||||||||| | |||||||| ||||| |
|
|
| T |
25019784 |
ctttggtggctaaaagttcataatgttgtttttgtttttgggttccaattgtggtggtcaagtcctttgacttgtttgggacttggctaatttttgtttg |
25019883 |
T |
|
| Q |
223 |
actctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||| |||||||| |||| ||| | || |||| |||||||||||||||||||| |
|
|
| T |
25019884 |
actctgtatatttgtaaatactttgggcctccttggtacatcttgtacttggaggtgtccgtggtttgttaatataagttccat |
25019967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 124 - 306
Target Start/End: Original strand, 41806222 - 41806406
Alignment:
| Q |
124 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
222 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| | ||| |||||||||| ||||| | | ||||||||||| | |||| ||||||||| |
|
|
| T |
41806222 |
ctttggtggctaaaagctcataatgttgtttttgtttttgggtttcaactgtggtggtcaagtcccttggcttgtttgggactaggctaatttttgtttg |
41806321 |
T |
|
| Q |
223 |
actctgtatatttgtaaatactttgga-ctttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
||| |||||||||||||||||||| || | | | ||||||||||| |||| ||| | || |||| |||||||||||||||||||| |
|
|
| T |
41806322 |
actatgtatatttgtaaatacttttgagcctccctgatacatcttgtacttggaggtgtccgtggtttgttaatataagttccat |
41806406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 125 - 302
Target Start/End: Original strand, 30573811 - 30573989
Alignment:
| Q |
125 |
tttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttga |
223 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| | ||||||||||||||| |||||| | | ||||||||||| | |||| |||||||||| |
|
|
| T |
30573811 |
tttggtggctaaaagctcataatgttgtttttgtttttgggttccaattgtggtggtcaagtcctttagcttgtttgggactaggctaatttttgtttga |
30573910 |
T |
|
| Q |
224 |
ctctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagtt |
302 |
Q |
| |
|
|| |||||||||||||||| | || | ||| | ||||||||| |||| ||| | | |||| |||||||||||||||| |
|
|
| T |
30573911 |
ctttgtatatttgtaaatattatgagccttcctaatacatcttgtacttggaggtgcccgtggtttgttaatataagtt |
30573989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 28042901 - 28042993
Alignment:
| Q |
97 |
ttgttggatagagttaagctgtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcct |
189 |
Q |
| |
|
|||||||||| ||| |||| ||| || |||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||| |
|
|
| T |
28042901 |
ttgttggataaagtaaagcggtactctttttggtggctaaaagctaacaatgttgtttttgtttttggtttccatttgtggtggtcaagtcct |
28042993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 129 - 306
Target Start/End: Original strand, 65068 - 65246
Alignment:
| Q |
129 |
gtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatt-ttgtttgactct |
227 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| | ||| |||||||||||||||||| | |||||| ||||| |||| ||| |||||||||| | |
|
|
| T |
65068 |
gtggcttaaagctaataatgttgtttttgtttttggtttccatttgtggtggtcgagtcctttggactgtttaggacttgcctgattattgtttgacttt |
65167 |
T |
|
| Q |
228 |
gtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |||| ||||| || |||||||||||||||||| |||||| |
|
|
| T |
65168 |
gtatatttgtaaatactttgggctttcttggtacatcttgtacttggaagtgtccgtgatttgttaatataaattccat |
65246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 129 - 306
Target Start/End: Complemental strand, 133564 - 133386
Alignment:
| Q |
129 |
gtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatt-ttgtttgactct |
227 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| | ||| |||||||||||||||||| | |||||| ||||| |||| ||| |||||||||| | |
|
|
| T |
133564 |
gtggcttaaagctaataatgttgtttttgtttttggtttccatttgtggtggtcgagtcctttggactgtttaggacttgcctgattattgtttgacttt |
133465 |
T |
|
| Q |
228 |
gtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |||| ||||| || |||||||||||||||||| |||||| |
|
|
| T |
133464 |
gtatatttgtaaatactttgggctttcttggtacatcttgtacttggaagtgtccgtgatttgttaatataaattccat |
133386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 306
Target Start/End: Complemental strand, 36685619 - 36685328
Alignment:
| Q |
24 |
gttgtttagtgtgttgatcatgtggaatgaacggtatgaaagattgttcaatagcacaagtagttccattgat---ttgttggatagagttaagctgtat |
120 |
Q |
| |
|
|||| ||||||||| |||||| |||||||| | || |||| |||||||| | ||| |||| ||||||||| ||| |||| | ||| |||| |||| |
|
|
| T |
36685619 |
gttgattagtgtgtggatcatttggaatgactgtaatcaaaggttgttcaacaatacaggtagatccattgatcagttgctggacacagtcaagcggtat |
36685520 |
T |
|
| Q |
121 |
tccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatt----- |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| |||||| | | ||||||||||| | |||||| |
|
|
| T |
36685519 |
tccctttggtggctaaaagctaataatgttgtttttgtttttggttcccaactgtggtggtcaagtcctttgatttgtttgggacttggctaatttttgt |
36685420 |
T |
|
| Q |
216 |
-ttgtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
||| |||||| |||||||||||||||||||| | ||| |||| |||||||| |||| ||| | || |||| |||||||||||||||||||| |
|
|
| T |
36685419 |
cttgattgactttgtatatttgtaaatactttaggcttccttggtacatcttatacttggaggtgtccgtgttttgttaatataagttccat |
36685328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 124 - 306
Target Start/End: Complemental strand, 11867106 - 11866923
Alignment:
| Q |
124 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
222 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| | ||||||||||||||| |||||| | || ||||||||||| | |||| ||||||||| |
|
|
| T |
11867106 |
ctttggtggctaaaagctcataatgttgtttttgtttttgggttccaattgtggtggtcaagtcctttgacttgtttgggactaggctaatttttgtttg |
11867007 |
T |
|
| Q |
223 |
actctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
|||||||||||||||||||||| || | | |||| |||||||| || | ||| | || |||| |||||||||||||||||||| |
|
|
| T |
11867006 |
actctgtatatttgtaaatactctgagcctccttggtacatcttgtagttggaggtgtccgtggtttgttaatataagttccat |
11866923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 306
Target Start/End: Original strand, 27527820 - 27527983
Alignment:
| Q |
145 |
aatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaat-tttgtttgactctgtatatttgtaaatac |
243 |
Q |
| |
|
|||||||||||||||||||| | |||||||| ||||| ||||| | | ||||||||||| | ||||| ||||||||| | ||||||||||| ||||| |
|
|
| T |
27527820 |
aatgttgtttttgtttttggttttcaattgtgatggtcaagtcccttggcttgtttgggactaggctaatctttgtttgattatgtatatttgtcaatac |
27527919 |
T |
|
| Q |
244 |
tttgga-ctttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
| | || ||| | || |||||||| |||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
27527920 |
tcttgagcttccctggtacatcttgtactaggaggtgcccgtgatttgttaatataagttccat |
27527983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 43310036 - 43309868
Alignment:
| Q |
24 |
gttgtttagtgtgttgatcatgtggaatgaacggtatgaaagattgttcaatagcacaagtagttccattgat---ttgttggatagagttaagctgtat |
120 |
Q |
| |
|
|||| ||||||||| |||||| |||||||| || || |||| |||||||| | ||| |||| ||||||||| |||||||||| ||| ||| ||| |
|
|
| T |
43310036 |
gttgcttagtgtgtggatcatttggaatgaccgtaatcaaaggttgttcaacaatacatgtagctccattgatcagttgttggataaagtcgagcggtac |
43309937 |
T |
|
| Q |
121 |
tccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcct |
189 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
43309936 |
tccctttggtggctaaaagctaataatgttgtttttgtttttggttcccaattgtggtggtcaagtcct |
43309868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 10688348 - 10688119
Alignment:
| Q |
14 |
agcttggtttgttgtttagtgtgttgatcatgtggaatgaacggtatgaaagattgttcaatagcacaagtagttccattgat---ttgttggatagagt |
110 |
Q |
| |
|
|||||| || |||| ||| ||||| |||||| |||||||| || || |||| ||||| |||| ||| |||| ||||||||| ||| |||||| ||| |
|
|
| T |
10688348 |
agcttgtttggttgcttactgtgtggatcatttggaatgatcgtaatcaaaggttgtttaataatacatgtagctccattgatcagttgatggataaagt |
10688249 |
T |
|
| Q |
111 |
taagctgtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcc |
210 |
Q |
| |
|
|||| | | || |||||||||||||||||| | |||||||||||||||||||| | ||||||||||||||| ||| || | | ||||||||||| | | |
|
|
| T |
10688248 |
aaagcggaactctctttggtggctaaaagctcataatgttgtttttgtttttgggttccaattgtggtggtcaagttctttggcttgtttgggacttggc |
10688149 |
T |
|
| Q |
211 |
taa-ttttgtttgactctgtatatttgtaa |
239 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
10688148 |
taatttttgtttgactctgtatatttgtaa |
10688119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 39 - 302
Target Start/End: Complemental strand, 26145981 - 26145709
Alignment:
| Q |
39 |
gatcatgtggaatgaacggtatgaaagattgttcaatagcacaagtagttccattgat---ttgttggatagagttaagctgtattccctttggtggcta |
135 |
Q |
| |
|
|||||| |||||||| || || ||||||||||||| | | | |||| ||||||||| ||| |||| | ||| |||| ||| ||||||||||||||| |
|
|
| T |
26145981 |
gatcatttggaatgaccgtaatcaaagattgttcaacaatataggtagctccattgatcagttgctggacaaagtcaagcggtactccctttggtggcta |
26145882 |
T |
|
| Q |
136 |
aaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatt------ttgtttgactctgt |
229 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| |||||||||| |||||| | |||||| |||| | |||||| ||| |||||| ||| |
|
|
| T |
26145881 |
aaagctaataatgttgtttttgtttttggttcccaactgtggtggtcaagtcctttggtttgtttgagacttggctaatttttgtcttgattgactttgt |
26145782 |
T |
|
| Q |
230 |
atatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagtt |
302 |
Q |
| |
|
||||||||||||||||||| ||| ||| || || || |||| ||| | || |||| |||||||||||||||| |
|
|
| T |
26145781 |
atatttgtaaatactttgggcttccttagtaaatgttgtacttggaggtgtccgtgttttgttaatataagtt |
26145709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 10687940 - 10687865
Alignment:
| Q |
231 |
tatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
306 |
Q |
| |
|
|||||||||||||||||| | | ||| |||||||| |||| ||| | || |||| |||||||||||||||||||| |
|
|
| T |
10687940 |
tatttgtaaatactttgggcatcattggtacatcttgtacttggaggtgtccgtggtttgttaatataagttccat |
10687865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 244
Target Start/End: Complemental strand, 366570 - 366449
Alignment:
| Q |
124 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
222 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| | |||||||||||||| ||||| | | |||||| |||| | |||| ||||||||| |
|
|
| T |
366570 |
ctttggtggctaaaagctcaaaatgttgtttttgtttttgggtttcaattgtggtggtcaagtcccttggcttgtttgcgactaggctaatttttgtttg |
366471 |
T |
|
| Q |
223 |
actctgtatatttgtaaatact |
244 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
366470 |
actatgtatatttgtaaatact |
366449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University