View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_74 (Length: 319)

Name: NF10151A_low_74
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_74
NF10151A_low_74
[»] chr4 (6 HSPs)
chr4 (36-302)||(45858795-45859057)
chr4 (41-308)||(45876731-45876988)
chr4 (54-185)||(56208539-56208670)
chr4 (47-191)||(47293456-47293600)
chr4 (53-191)||(55705881-55706019)
chr4 (58-166)||(54304249-54304357)
[»] chr5 (3 HSPs)
chr5 (46-191)||(35854542-35854687)
chr5 (115-191)||(35802504-35802580)
chr5 (58-189)||(10521303-10521434)
[»] chr2 (1 HSPs)
chr2 (55-196)||(24357450-24357591)
[»] chr8 (2 HSPs)
chr8 (53-192)||(7972083-7972222)
chr8 (58-191)||(7961718-7961851)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 36 - 302
Target Start/End: Original strand, 45858795 - 45859057
Alignment:
Q  36 ttcttaaatcaacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgaga 135  Q
    |||| |||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  45858795 ttctgaaatcaacctgattatcttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgaga 45858894  T
Q  136 tactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctagtgacaagacagtagctgtaagtaactattggatggatat 235  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||    |||||||    
T  45858895 tactgcatccttaccggtccaaaccctctcctgtgcagcctcttccatcttgtctacctagtgacaggacagtagcggtaagtaactat----tggatat 45858990  T
Q  236 acgagaaggaagaacagaaaacatggaaaatagatttttcttaaataaatttaaaacatacagtcat 302  Q
    || || |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45858991 acaaggaggaagaacataaagcatggaaaatagatttttcttaaataaatttaaaacatacagtcat 45859057  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 41 - 308
Target Start/End: Original strand, 45876731 - 45876988
Alignment:
Q  41 aaatcaacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactg 140  Q
    ||||||||||| ||||||||||||||||  || |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||    
T  45876731 aaatcaacctgtctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctg 45876830  T
Q  141 catccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctagtgacaagacagtagctgtaagtaactattggatggatatacgag 240  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||  || |||||||    ||||||||    |||| |||  ||    
T  45876831 catccttaccggtccaaaccctcccttgtgcaacctcttccatcttgtctacctagcgacgggatagtagct----gtaactat----tggacatagaag 45876922  T
Q  241 aaggaagaacagaaaacatggaaaatagatttttcttaaataaatttaaaacatacagtcattgatct 308  Q
      ||||||||||||||||  |||||||| ||||||||  || ||||||||||||||||||||||||||    
T  45876923 ggggaagaacagaaaaca--gaaaatagctttttcttgtatgaatttaaaacatacagtcattgatct 45876988  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 56208539 - 56208670
Alignment:
Q  54 tgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggt 153  Q
    |||||||||||||| | ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  56208539 tgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggt 56208638  T
Q  154 ccaaaccctcccctgtgcaaccttttccatct 185  Q
    | ||||||||||||||||||||| ||||||||    
T  56208639 ctaaaccctcccctgtgcaacctcttccatct 56208670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 47 - 191
Target Start/End: Complemental strand, 47293600 - 47293456
Alignment:
Q  47 acctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatcct 146  Q
    ||||| |||| ||||||||||| |||||||| ||| |||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||| ||||    
T  47293600 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtcct 47293501  T
Q  147 taccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 191  Q
    ||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  47293500 tactggtccaaatccttccctgtgcaacctcttccatcttgtcta 47293456  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 55706019 - 55705881
Alignment:
Q  53 ctgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccgg 152  Q
    |||| |||||||||||  || |||| ||| |  |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| || |||||||    
T  55706019 ctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtctttaccgg 55705920  T
Q  153 tccaaaccctcccctgtgcaaccttttccatcttgtcta 191  Q
    ||||||||||||| || ||||||| ||||||||||||||    
T  55705919 tccaaaccctcccatgcgcaacctcttccatcttgtcta 55705881  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 54304357 - 54304249
Alignment:
Q  58 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 157  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||| | ||| ||||||||||||||||||||  |||||  ||| |||||||| ||||||    
T  54304357 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 54304258  T
Q  158 accctcccc 166  Q
    ||| |||||    
T  54304257 accttcccc 54304249  T

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Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 35854687 - 35854542
Alignment:
Q  46 aacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatcc 145  Q
    |||||| |||| ||||||||||| |||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||    
T  35854687 aacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtcc 35854588  T
Q  146 ttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 191  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35854587 ttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35854542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 35802504 - 35802580
Alignment:
Q  115 agcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 191  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35802580  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 10521434 - 10521303
Alignment:
Q  58 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 157  Q
    ||||||||||| |||||| | ||| || |||||||||||||| |||| |||||||||||||||||||||||| |||||| |||| ||||| ||| |||||    
T  10521434 ttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgatccaa 10521335  T
Q  158 accctcccctgtgcaaccttttccatcttgtc 189  Q
    | |||||  |||| || || || |||||||||    
T  10521334 atcctcctatgtggaatctctttcatcttgtc 10521303  T

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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 24357591 - 24357450
Alignment:
Q  55 gtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtc 154  Q
    |||||||||||||| |||||||| ||| ||||| |||||||| || || |  |||||||||||||||||||||||||| ||| ||||||| ||||| |||    
T  24357591 gtcttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtc 24357492  T
Q  155 caaaccctcccctgtgcaaccttttccatcttgtctacctag 196  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||    
T  24357491 caaactctcccctgtgctaccttctccatcttgtccacctag 24357450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 53 - 192
Target Start/End: Original strand, 7972083 - 7972222
Alignment:
Q  53 ctgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccgg 152  Q
    |||| |||||| | || |||||||| ||| ||||||||||||||||| ||||  ||||  |||||||| |||||||||| |||||||||||| |||||||    
T  7972083 ctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaaccattagatactgcatctttaccgg 7972182  T
Q  153 tccaaaccctcccctgtgcaaccttttccatcttgtctac 192  Q
    |||||| ||||| ||||||||||| |||||||||||||||    
T  7972183 tccaaatcctcctctgtgcaacctcttccatcttgtctac 7972222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 7961718 - 7961851
Alignment:
Q  58 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 157  Q
    |||||| |||| |||||||| ||| ||||||||||||||  | ||||  |||||||||||||| |||||| ||| ||||| |||||| ||||| ||||||    
T  7961718 ttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcattagatattgcatctttaccagtccaa 7961817  T
Q  158 accctcccctgtgcaaccttttccatcttgtcta 191  Q
    |  ||||| |||||||||| ||||||||||||||    
T  7961818 attctcccttgtgcaacctcttccatcttgtcta 7961851  T

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