View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151A_low_84 (Length: 308)
Name: NF10151A_low_84
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_84 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 11172903 - 11173210
Alignment:
| Q |
8 |
aatatcacacacaaaattagcaaatgataaattgatttatagcaacaatgaccataatatataataatcccaggtgaaata-----------------ta |
90 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11172903 |
aatatcacacacaaaattaccaaatgataaattgatatttagcaacaatgaccataatatataataatcccaggtgaaataattcaagtacatatatata |
11173002 |
T |
|
| Q |
91 |
taatatggaaaacaacattataccctccaataaacaaatttaactgaaaaatccgactcaaccgaataacttattaacttatgagtccatattcaccaat |
190 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
11173003 |
taatatggaaaaca---ttataccccccaataaacaaatttaactgaaaaatccgactcaaccgaataacttattagcatatgaatccatattcaccaat |
11173099 |
T |
|
| Q |
191 |
gatgagaaacaaagttttctatatgacacatacaattcaaatatgaagattccaattaacttcagcatagcacaaaggctttcactgaaggtattgttct |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11173100 |
gatgagaaacaaagttttctatatgacacatacaattcaaatatgaagattccaattaacttcagcatagcacaaaggc-ttcactgaaggtattgttct |
11173198 |
T |
|
| Q |
291 |
cgaagtctatct |
302 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11173199 |
cgaagtctatct |
11173210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University