View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151A_low_86 (Length: 303)

Name: NF10151A_low_86
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151A_low_86
NF10151A_low_86
[»] chr1 (2 HSPs)
chr1 (23-196)||(26597686-26597859)
chr1 (253-292)||(26597578-26597617)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 26597859 - 26597686
Alignment:
Q  23 tactccacgccctaacatcatcatctcatactggttttgatgtgtctgtggatgagtagtagttaacaaagctgtcagattccggtgaccggagaaaaac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26597859 tactccacgccctaacatcatcatctcatactggttttgatgtgtctgtggatgagtagtagttaacaaagctgtcagattccggtgaccggagaaaaac 26597760  T
Q  123 tcatccgtagccgctgtcggtatagatgggaaatgggttgaccttgttccatttactagctgtcttagatcata 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26597759 tcatccgtagccgctgtcggtatagatgggaaatgggttgaccttgttccatttactagctgtcttagatcata 26597686  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 26597617 - 26597578
Alignment:
Q  253 catccatttttcatgtatatatgagaggctagggtatata 292  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26597617 catccatttttcatgtatatatgagaggctagggtatata 26597578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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