View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_87 (Length: 302)
Name: NF10151A_low_87
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 24 - 292
Target Start/End: Complemental strand, 49484365 - 49484097
Alignment:
| Q |
24 |
ggatggggatatgtttgaagttgactacgatgttgcacttatgtcaaaagcaattgaggatgctattgagacggatcctactggtgatgttaatcgtatt |
123 |
Q |
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| T |
49484365 |
ggatggggatatgtttgaagttgactacgatgttgcacttatgtcaaaaacaattgaggatgctattgagacagatcctactggtgatgttaattgtatt |
49484266 |
T |
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| Q |
124 |
tctctttctttagtgagtagcaaaatattggccatggtcattgaatactgcaagaagcacaagaacgcacaaatgtcagatgttgatctcatggattggg |
223 |
Q |
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| T |
49484265 |
tctctttctttagtgagtagcaaaatattggccatggtcattgaatactgcaagaagcacaagaacgcacaaatgtcagatgttgatctcatggattggg |
49484166 |
T |
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| Q |
224 |
atgttgaattcgtcaatgttcactatacaactttgtttgaccttgttttatcttcaaactacatgaaca |
292 |
Q |
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| T |
49484165 |
atgttgaattcgtcaatgttcactatacaactttgtttgaccttgttttatcttcaaactacatgaaca |
49484097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 55072199 - 55072247
Alignment:
| Q |
135 |
agtgagtagcaaaatattggccatggtcattgaatactgcaagaagcac |
183 |
Q |
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| T |
55072199 |
agtgaatagcaaaatgttgagcatggtcgttgaatactgcaagaagcac |
55072247 |
T |
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