View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_89 (Length: 298)
Name: NF10151A_low_89
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_89 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 51455939 - 51455655
Alignment:
| Q |
4 |
tcatttccaccatgtagataatcgcgacctcggaaatcatacccaagcttaattggatctgcaccacctagaagcttcccaccacggagctcgcagcaac |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455939 |
tcatttccaccatgtagataatcgcgacctcggaaatcatacccaagcttaattggatctgcaccacctagaagcttcccaccacggagctcgcagcaac |
51455840 |
T |
|
| Q |
104 |
agaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacagct |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
51455839 |
agaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttgtcactacaaaaagtgtgaagtcaacaact |
51455740 |
T |
|
| Q |
204 |
atatagcattagaataagtnnnnnnnngcattgattaatataccaaatcagtccttaccagaacacacgctcatctttagaataat |
289 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51455739 |
atatagcattagaataagt-aaaaaaagcattgattaatataccaaatcagtctttaccagaacacacgctcatctttagaataat |
51455655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 30206705 - 30206922
Alignment:
| Q |
3 |
atcatttccaccatgtagataatcgcgacctcggaaatcatacccaagcttaattggatctgcaccacctagaagcttcccaccacggagctcgcagcaa |
102 |
Q |
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||||||||||||||| |||||||| | |||||| | | || ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30206705 |
atcatttccaccatgcagataatcaagccctcggtagataaactcaaacttgattggatctgcaccacctagaagcttcccaccacgaagctcgcagcaa |
30206804 |
T |
|
| Q |
103 |
cagaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacagc |
202 |
Q |
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|| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| | | |
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| T |
30206805 |
caaaggagacaaatgtcaaaagagcattttgtacagcttctgtggtagtcaaatattgacgttttgcagttgtcactacaaaaagtgttaagtcattaac |
30206904 |
T |
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| Q |
203 |
tatatagcattagaataa |
220 |
Q |
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||||||| ||||| |||| |
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| T |
30206905 |
tatatagaattagtataa |
30206922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 51480637 - 51480424
Alignment:
| Q |
7 |
tttccaccatgtagataatcgcgacctcggaaatcatacccaagcttaattggatctgcaccacctagaagcttcccaccacggagctcgcagcaacaga |
106 |
Q |
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||||||||||| |||||||| || |||||||| | || ||| || ||||||||||| |||||||||||||||||||| ||| ||||| || ||||| | |
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| T |
51480637 |
tttccaccatgaagataatcacggcctcggaagataaactcaaactcaattggatctgtaccacctagaagcttcccacaacgaagctcacaacaacaaa |
51480538 |
T |
|
| Q |
107 |
ggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacagctata |
206 |
Q |
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| ||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||| ||| |
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| T |
51480537 |
gaagacaaatgttaaaagagcattctgtacagcttctgtggtagtcaaatattgatgttttgcagttgtcactacaaaaagtgttaaatcattagcaata |
51480438 |
T |
|
| Q |
207 |
tagcattagaataa |
220 |
Q |
| |
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||| || ||||||| |
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| T |
51480437 |
tagaatcagaataa |
51480424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 51497491 - 51497310
Alignment:
| Q |
9 |
tccaccatgtagataatcgcgacctcggaaatcatacccaagcttaattggatctgcaccacctagaagcttcccaccacggagctcgcagcaacagagg |
108 |
Q |
| |
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||||||||| |||||||| || |||||||| | || ||| || |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| |
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| T |
51497491 |
tccaccatgaagataatcacgccctcggaagataaactcaaactcaattggatctgcaccacctagaagcttcccaccacgaagctcacagcaacaaagg |
51497392 |
T |
|
| Q |
109 |
agacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgt |
190 |
Q |
| |
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||||||| ||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||| | |||||||| ||||||| |
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| T |
51497391 |
agacaaatgtcaaaagaacattttgtacagcttctgtggtagtcgaatattgaggttttgcagatgtcactacagaaagtgt |
51497310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 43160867 - 43160584
Alignment:
| Q |
8 |
ttccaccatgtagataatcgcgacctcggaaatcatacccaagcttaattggatctgcaccacctagaagcttcccaccacggagctcgcagcaacagag |
107 |
Q |
| |
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||||||||| ||||||||| |||||||||||| |||| ||||| ||| ||||||| |||||||||||||||||||||||||||||| || |||||||| |
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| T |
43160867 |
ttccaccatatagataatcacgacctcggaaaatatactgaagctcaat-ggatctggaccacctagaagcttcccaccacggagctcacaacaacagag |
43160769 |
T |
|
| Q |
108 |
gagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaaca-----gc |
202 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| | |
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| T |
43160768 |
gagacaaaggttaaaagggcattttgtgcagcttctgcggtagtcaaatattgatgttttgcagttgtcactataaaaagtgtgaagccaacattgtcac |
43160669 |
T |
|
| Q |
203 |
tatatagcattagaataagtnnnnnnnngcattgattaatataccaaatcagtccttaccagaacacacgctcatctttagaataat |
289 |
Q |
| |
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|||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43160668 |
tataaagcattag-ataagtaaagaaaa-cattgattaatataccaaatcagtccttaccagaacacacgcgcatctttagaataat |
43160584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 27396639 - 27396465
Alignment:
| Q |
11 |
caccatgtagataatcgcgacctcggaaatcatacccaagcttaattggatctgcaccacctagaagcttcccaccacggagctcgcagcaacagaggag |
110 |
Q |
| |
|
||||||||||||||| |||||||||| || || ||| | || ||| ||||| ||||||||||||| ||||| ||| ||||| |||||||||||||| |
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| T |
27396639 |
caccatgtagataatttggacctcggaagacaaactcaaaatcaaatggttctgccccacctagaagctgcccacaacgaagctcacagcaacagaggag |
27396540 |
T |
|
| Q |
111 |
acaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaa |
185 |
Q |
| |
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|||||||||||| || |||| || |||||||||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
27396539 |
acaaaggtcaaaggaacattctgtgcagcttctgtggtaatcaaatattgatgttttgcagttgtcgctacaaaa |
27396465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 20868637 - 20868751
Alignment:
| Q |
74 |
gaagcttcccaccacggagctcgcagcaacagaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagtt |
173 |
Q |
| |
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|||||| ||||| ||| ||||| |||||||| | ||||||||||||||||||||||||| ||| |||| ||||||||||||||| || | | |||||| |
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| T |
20868637 |
gaagctccccacgacgaagctcatagcaacagcgaagacaaaggtcaaaagagcattttgcacaacttcggtggtagtcaaatatcgagctctggcagtt |
20868736 |
T |
|
| Q |
174 |
atcactacaaaaagt |
188 |
Q |
| |
|
|||||||||||||| |
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| T |
20868737 |
gtcactacaaaaagt |
20868751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 137301 - 137431
Alignment:
| Q |
57 |
tggatctgcaccacctagaagcttcccaccacggagctcgcagcaacagaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaat |
156 |
Q |
| |
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|||||| |||||||||||||||| |||| ||| || || |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
137301 |
tggatcagcaccacctagaagctcaccacgacgaagttcagcgcaacaacgaagacaaaggtcaaaagagcattttgtacagcttctgtggtagtcaaat |
137400 |
T |
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| Q |
157 |
attgatgttttgcagttatcactacaaaaag |
187 |
Q |
| |
|
||| | ||| |||||| ||||||||||||| |
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| T |
137401 |
attaagctttggcagttgtcactacaaaaag |
137431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 18085643 - 18085553
Alignment:
| Q |
100 |
caacagaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgt |
190 |
Q |
| |
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||||| || ||||||| || ||||||||||| | |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
18085643 |
caacaaagaagacaaatgttaaaagagcattctttacagctcctgtggtagtcgaatattgatgttttgcagttgtcactacaaaaagtgt |
18085553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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