View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151A_low_96 (Length: 292)
Name: NF10151A_low_96
Description: NF10151A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151A_low_96 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 24423368 - 24423659
Alignment:
| Q |
1 |
tatttttatgcaaaactttctacttttgatttagagaatttttaaattttaaagaaaacaaatatagtaataatatattggaagttgtgcagttgaccct |
100 |
Q |
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| T |
24423368 |
tatttttatgcaaaactttctacttttgatttagagaatttttaaattttaaagaaaacaaatatagtaataatatattggaagttgtgcagttgaccct |
24423467 |
T |
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| Q |
101 |
taaaaatgtgaaaaatactcttttcaatgtaaaaattgcatttttgtttcattaagtagtaccccgaaagcactagccagcatgacccggcatatagaag |
200 |
Q |
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| T |
24423468 |
taaaaatgtgaaaaatactcttttcaatgtaaaaattgcatttttgtttcattaagtagtaccccgaaagcactagccagcatgacccggcatatagaag |
24423567 |
T |
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| Q |
201 |
taaatagtaaatcccaacttaaataatttttaacttacttcagttagatgcaaatttgaactctcactattattgccaaataaaatttattg |
292 |
Q |
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| T |
24423568 |
taaatagtaaatcccaacttaaataatttttaacttacttcagttagatgcaaatttgaactctcactattattgccaaataaaatttattg |
24423659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 24410561 - 24410445
Alignment:
| Q |
24 |
ttttgatttagagaatttttaaattttaaagaaaacaaatatagtaataatatattggaagttgtgcagttgaccct-taaaaatgtgaaaaatactctt |
122 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| || |||||||| | ||| ||||||||| |||||||||||| |
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| T |
24410561 |
ttttgatttagagcatttttaaattttaaagtaaacaaatatagtaataataaatttaaacttgtgcagccaaacctataaaaatgtaaaaaatactctt |
24410462 |
T |
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| Q |
123 |
ttcaatgtaaaaattgc |
139 |
Q |
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|| ||| ||||| |||| |
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| T |
24410461 |
tttaatataaaagttgc |
24410445 |
T |
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