View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_high_1 (Length: 654)
Name: NF10151_high_1
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 506; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 49 - 639
Target Start/End: Original strand, 32371603 - 32372192
Alignment:
| Q |
49 |
aatctagtttgtgaggtactctttacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattt |
148 |
Q |
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| T |
32371603 |
aatctagtttgtgaggtactctttacacaaattgactggccttttatgcatcaaaaa-tgttagcttttatgctttcaaaggcataactctgccttattt |
32371701 |
T |
|
| Q |
149 |
tcaccttggaattgctgcaattcatgaataaataaatactgtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggcc |
248 |
Q |
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| T |
32371702 |
tcaccttggaattgctgcaattcatgaataaataaatactgtttggaattgtatttatatcatggttaaaaagcttgcaagtcagcttgtagacttggcc |
32371801 |
T |
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| Q |
249 |
aagtttacgagcccagcaacccatacaagttggctcgccaacataatcgttttctggacagatgcgagaaaagctcacgattatggagttcgaannnnnn |
348 |
Q |
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| T |
32371802 |
aagtttacgagcccagcaacccatacaagttggctcacgaacatattcgttttctggacagatgcgagaaaaactcacgattatggagttcgaatttttt |
32371901 |
T |
|
| Q |
349 |
nctaaaaaagcccaaatcgcagtaccgcctcacagtttattgaattctaagagttgtatcctaatatcttctctaatctctagtctttgtgtttctctta |
448 |
Q |
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| T |
32371902 |
tctaaaaaagcccaaatcgcagtaccgcctcacagtttattgaattctaagagttgtatcctaatatcttctctaatctctagtctttgtgtttctctta |
32372001 |
T |
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| Q |
449 |
aatctctgtgtgatactgttgctttgtgtcatctctggctttcgtctcagacgagttgcactgtgttttttcggccttctcttgtgttcgcatgtcaggt |
548 |
Q |
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| T |
32372002 |
catctctgtgtgacactgttgctttgtgtcatctctggctttcgtctcagacgagttgcactgtgttttttcggccttctcttgtgttcgcatgtcaggt |
32372101 |
T |
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| Q |
549 |
ttgtggtcctcttctcttttttcgtttgtctggtttgcaatgctttgtccagtctgatatgttcctcttttctattttgtctggctctgtg |
639 |
Q |
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| T |
32372102 |
ttgtggtcctcttctcttttttcgtttgtctggtttgcaatgctttgtccagtctgatgtgttcctcttttctattttgcctggctgtgtg |
32372192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 57 - 299
Target Start/End: Complemental strand, 32365224 - 32364989
Alignment:
| Q |
57 |
ttgtgaggtactctttacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttg |
156 |
Q |
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| T |
32365224 |
ttgtgaggcactctttacacaaattgactggccttttatgcattaaaaaatgttaccttttatgctttcaaag-----actatgccctattttcaccttg |
32365130 |
T |
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| Q |
157 |
gaattgctgcaattcatgaataaataaatact--gtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagttt |
254 |
Q |
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| T |
32365129 |
gaattgc---aattcatgaataa-taaatactctgtctggaattgtatttatatcatggttagcaaactcgcaagtcagctcgtagagttggccaagttt |
32365034 |
T |
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| Q |
255 |
acgagcccagcaacccatacaagttggctcgccaacataatcgtt |
299 |
Q |
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||||| ||||| |||||||||||||| ||||| |||||||||||| |
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| T |
32365033 |
acgagtccagctacccatacaagttgactcgcgaacataatcgtt |
32364989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 202
Target Start/End: Original strand, 32357335 - 32357484
Alignment:
| Q |
52 |
ctagtttgtgaggtactctttacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttca |
151 |
Q |
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||||||||||| ||| ||||||||| || ||||||||||||||||||| | | || ||||||||||||| |||| |||| |||||| |||| |||||| |
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| T |
32357335 |
ctagtttgtgaagtattctttacaccaactgactggccttttatgcattagagaagtttaggttttatgccttcaccggcagaactcttccttcttttca |
32357434 |
T |
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| Q |
152 |
ccttggaattgctgcaattcatgaataaataaata--ctgtttggaattgtat |
202 |
Q |
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| |||| ||||||||||||||||| ||||| ||||||| |||||||| |
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| T |
32357435 |
tcccagaat---tgcaattcatgaataaagaaatactctgtttgtaattgtat |
32357484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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