View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_high_10 (Length: 390)
Name: NF10151_high_10
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Original strand, 39704369 - 39704733
Alignment:
| Q |
20 |
ggagaagcttttcattttcctggacaagttacattctactatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgcttatag |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
39704369 |
ggagaagcttttcattttcctggacaagttacattctattatcaacaatttccacaatcacttaagatcacatcaactgcaatgatttcaatgcttatag |
39704468 |
T |
|
| Q |
120 |
gaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgta |
219 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704469 |
gtattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgta |
39704568 |
T |
|
| Q |
220 |
ttggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttacgaggttatgatgttatga |
319 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39704569 |
ttggatgttggtcatgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttaagaggttatgatgttatga |
39704668 |
T |
|
| Q |
320 |
tgaatgttatctgtgtttggttggaataataataagtgataatgataatatgatcttcttctctc |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704669 |
tgaatgttatctgtgtttggttggaataataataagtgataatgataatatgatcttcttctctc |
39704733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 39695460 - 39695740
Alignment:
| Q |
20 |
ggagaagcttttcattttcctggacaagttacattctactatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgcttatag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39695460 |
ggagaagcttttcattttcctggacaagttacattctactaccaacaatttccacaatcacttaagaacacatcaacagcaatgatttcaatgcttatag |
39695559 |
T |
|
| Q |
120 |
gaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgta |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695560 |
gaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgta |
39695659 |
T |
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| Q |
220 |
ttggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgttta |
300 |
Q |
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||||||||| || |||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
39695660 |
ttggatgttagtagtgtttggaggtatcaactttgtgtattacctattgtgctctatttcttacaagtatgaaaatgttta |
39695740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 39934653 - 39934381
Alignment:
| Q |
20 |
ggagaagcttttcattttcctggacaagttacattctactatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgcttatag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39934653 |
ggagaagcttttcattttcctggacaagttacattctattatcaacaatttccacaatcacttaagagcacatcaactgcaatgatttcaatgcttatag |
39934554 |
T |
|
| Q |
120 |
gaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgta |
219 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934553 |
gaattgctttttacttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgta |
39934454 |
T |
|
| Q |
220 |
ttggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaa |
292 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
39934453 |
ttggatgttagtcgtgtttggagctatcaactttgtgtattatttactgtgctctatttcttacaaatatgaa |
39934381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 39929006 - 39928696
Alignment:
| Q |
20 |
ggagaagcttttcattttcctggacaagttacattctactatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgcttatag |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||| | ||||||||||||||| |
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| T |
39929006 |
ggagaagcgtttcattttcctggacaagttacattctattatcaacaatttccacaatcgctaaagagcacatcaactgcaacggtttcaatgcttatag |
39928907 |
T |
|
| Q |
120 |
gaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgta |
219 |
Q |
| |
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| |||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| |
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| T |
39928906 |
gggttgctttttacatgagcaatgcattaattgatcaagttcgtaggagtactgattggttacctgatgacataaatcatgggaagattgacaatgtgta |
39928807 |
T |
|
| Q |
220 |
ttggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttacgaggttatgatgttatga |
319 |
Q |
| |
|
|||||||| ||| | | || | ||| |||||||||||||||||| | || ||| | |||||||||||||||||||||| |||| | ||||||||||| |
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|
| T |
39928806 |
ctggatgttagtcctactcgggggtataaactttgtgtattacttattttgttcttctccttacaagtatgaaaatgtttaagaggatgtgatgttatga |
39928707 |
T |
|
| Q |
320 |
tgaatgttatc |
330 |
Q |
| |
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| ||||||||| |
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| T |
39928706 |
taaatgttatc |
39928696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 38061683 - 38061607
Alignment:
| Q |
20 |
ggagaagcttttcattttcctggacaagttacattctactatcaacaatttccacaatcacttaagagcacatcaac |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |
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| T |
38061683 |
ggagaagcttttcattttcctggacaagttacattctattatcaacaatttccacagtcactgaagagcacatcaac |
38061607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 330
Target Start/End: Complemental strand, 38059047 - 38058936
Alignment:
| Q |
219 |
attggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttacgaggttatgatgttatg |
318 |
Q |
| |
|
||||||||||||| || ||||| | |||||||||| |||||||||| | || ||| | |||||||||||||||||| || |||| | | |||||||| |
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|
| T |
38059047 |
attggatgttggttgtatttgggggtatcaactttaggtattacttattttgttcttctgtttacaagtatgaaaatgtgtaagaggatgtaatgttatg |
38058948 |
T |
|
| Q |
319 |
atgaatgttatc |
330 |
Q |
| |
|
|| ||||||||| |
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|
| T |
38058947 |
ataaatgttatc |
38058936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 38059126 - 38059050
Alignment:
| Q |
125 |
gctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatgg |
201 |
Q |
| |
|
|||||| | ||||||||| ||||| |||||||| | | ||||| |||| |||||||||| ||||| ||||||||||| |
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|
| T |
38059126 |
gcttttaacttgagcactactttagttgaccaaatccataggattactaattggttaccagatgacataaatcatgg |
38059050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 4847134 - 4847209
Alignment:
| Q |
40 |
tggacaagttacattctactatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgctt |
115 |
Q |
| |
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|||| |||||||||| ||||| ||||||||||||||| | || |||||||||||| ||||||||||||||||| |
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|
| T |
4847134 |
tggagaagttacattttactacaaacaatttccacaataatttttgagcacatcaactccaatgatttcaatgctt |
4847209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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