View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_high_12 (Length: 380)
Name: NF10151_high_12
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_high_12 |
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| [»] scaffold0499 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 34342784 - 34342419
Alignment:
| Q |
1 |
aaaagtgtgtgagtagtccacacgttttatggctataaaaaataaagaaaacaagtgaaacaatcatcaaagaacaaagattcaatagagagaga--tat |
98 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
34342784 |
aaaagtctgtgagtagtccacacgttttatggctataaaaaataaagaaaacaagtgaaactatcatcaaagaacaaagattcaatagagagagagatat |
34342685 |
T |
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| Q |
99 |
ttcatttccagttcctgtttcaaaacagaacacaaacttggcctcaatggctaagaacaacaatatccacaaacacctcttactcttaccatttttgtcc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
34342684 |
ttcatttccagttcctgtttcaaaacagaacacaaacttggcctcaatggctaagaacaacaacatccacaatcacctcttactcttatcatttttgtcc |
34342585 |
T |
|
| Q |
199 |
cttcttttctcaatccatgctaaactcacccttcacccttcagacacaaaagctctttcaactctacaaaacaacctaggactcaaccttgatactacta |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34342584 |
cttcttttctcaatccatgctaaactcacccttcacccttcagacacaaaagctctttcaactctacaaaacaacctaggactcaaccttgatactacta |
34342485 |
T |
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| Q |
299 |
caaacaacctatgtaacaaggaaggtgtgttctgtgagagaagactcaccaacaatgaaagctatg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34342484 |
caaacaacctatgtaacaaggaaggtgtgttctgtgagagaagactcaccaacaatgaaagctatg |
34342419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 9953285 - 9953338
Alignment:
| Q |
36 |
taaaaaataaagaaaacaagtgaaacaatcatcaaagaacaaagattcaataga |
89 |
Q |
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| T |
9953285 |
taaaaaataaagaaaacaagtgaaacaaccatcaaagaacaaggattcaataga |
9953338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 8979795 - 8979749
Alignment:
| Q |
36 |
taaaaaataaagaaaacaagtgaaacaatcatcaaagaacaaagatt |
82 |
Q |
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| T |
8979795 |
taaaaaataaagaaaacaagtgaaacaaccatcaaataacaaggatt |
8979749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0499 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0499
Description:
Target: scaffold0499; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 682 - 630
Alignment:
| Q |
11 |
gagtagtccacacgttttatggctataaaaaataaagaaaacaagtgaaacaa |
63 |
Q |
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| T |
682 |
gagtagtccacacattttattcacttaaaaaataaagaaaacaagtgaaacaa |
630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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