View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151_high_13 (Length: 373)
Name: NF10151_high_13
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 13345699 - 13345344
Alignment:
| Q |
1 |
tccaacatgcaaggaaataaaatcatacaatacaacacattcacacatacaaacaattaaatttccagcaattcaaacaactaaattaattactgataaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13345699 |
tccaagatgcaaggaaataaaatcatacaatacaacacattcacacatacaaacaattaaatttccagcaattcaaacaactaaattaattactgataaa |
13345600 |
T |
|
| Q |
101 |
aaccattcatgatttcaccaatgcctggaccccacaagcaagtcttcatttggtcttcttgacaaaagtcccaatcagacaattgatcataatctgtggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13345599 |
aaccattcatgatttcaccaatgcctggaccccacaagcaagtcttcatttggtcttcttgacaaaagtcccaatcagacaattgatcataatctgtggc |
13345500 |
T |
|
| Q |
201 |
agaatttactgatgcattagaaatgtacccttctccactttctccattatatgatgagccacaaatttcacttttcatttccttatttgtttccattatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13345499 |
agaatttactgatgcattagaaatgtacccttctccactttcaccattatatgatgagccacaaatttcacttttcatttccttatttgtttccattatc |
13345400 |
T |
|
| Q |
301 |
tccacatgcatctttctagagtcacactcataattacccttctcatcattctcatg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13345399 |
tccacatgcatctttctagagtcacactcatatttacccttctcatcattctcatg |
13345344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University