View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151_high_17 (Length: 342)
Name: NF10151_high_17
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 9592640 - 9592945
Alignment:
| Q |
1 |
ttttcgactggtactaaattttcttgaaaattgttgtttacgctacaaagaaaattaaaaaacaccataaattacaaatttaatttcaatttctatcggc |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
9592640 |
ttttcaactggtactaaattttcctgaaaattgttgtttacactacaaacaaaattaagaaacaccataaattataaatttaattccaatttctatcggc |
9592739 |
T |
|
| Q |
101 |
atttaactatcattgaagttattttgatattttcgtggtgtttcttaaaattctttgatgtaggaagagcatttttcaatttccactctagaccaaacaa |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9592740 |
atttaactatcattaaagttattttgatattttcgtggtgtttcttagaattctttaatgtaggaagagcatttttcaatttccactctagaccaaacaa |
9592839 |
T |
|
| Q |
201 |
tgcagttaacttgcttttcatgcatgttctctaccaccacatagtaggcttagaccccacccttggtgaaaactagcagaaaccgtgttcccacccttac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9592840 |
tgcagttaacttgcttttcatgcatgttctctaccaccacatagtaggcttagaccccacccttggtgaaaactagcagaaaccgtgttcccacccttac |
9592939 |
T |
|
| Q |
301 |
taagtt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
9592940 |
taagtt |
9592945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 39303231 - 39303279
Alignment:
| Q |
118 |
gttattttgatattttcgtggtgtttcttaaaattctttgatgtaggaa |
166 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||| |||||||||||| |||| |
|
|
| T |
39303231 |
gttagtttgatatttttgtggtgtttcctaacattctttgatgtgggaa |
39303279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 24122458 - 24122415
Alignment:
| Q |
118 |
gttattttgatattttcgtggtgtttcttaaaattctttgatgt |
161 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
24122458 |
gttattttggtattttcgtggtgtttcttagaatcctttgatgt |
24122415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 28651054 - 28651136
Alignment:
| Q |
95 |
atcggcatttaactatcattgaagttattttgatattttcgtggtgtttcttaaaattctttgatgtaggaagagcatttttc |
177 |
Q |
| |
|
||||||| |||||| ||| ||| |||||||| |||||||||||||||| || ||| ||||||||| |||| | |||||||| |
|
|
| T |
28651054 |
atcggcagttaactgtcaatgagattattttgttattttcgtggtgttttatagaatcctttgatgtgggaacatcatttttc |
28651136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 45962262 - 45962190
Alignment:
| Q |
94 |
tatcggcatttaactatcattgaagttattttgatattttcgtggtgtttcttaaaattctttgatgtaggaa |
166 |
Q |
| |
|
|||||||| |||| |||| ||| ||||||||| |||||| ||||||||||||| | | ||||||||| |||| |
|
|
| T |
45962262 |
tatcggcagttaattatcgatgaggttattttgctattttggtggtgtttcttacactcctttgatgtgggaa |
45962190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 41639715 - 41639657
Alignment:
| Q |
119 |
ttattttgatattttcgtggtgtttcttaaaattctttgatgtaggaagagcatttttc |
177 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| |||||||| |||| | |||||||| |
|
|
| T |
41639715 |
ttattttggtattttcgtggtgtttcctaaaatcatttgatgtgggaacaacatttttc |
41639657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 4333054 - 4333096
Alignment:
| Q |
114 |
tgaagttattttgatattttcgtggtgtttcttaaaattcttt |
156 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
4333054 |
tgaagttattttgatattttcgtggtttttcttagaatccttt |
4333096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University