View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151_high_18 (Length: 333)

Name: NF10151_high_18
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151_high_18
NF10151_high_18
[»] chr7 (2 HSPs)
chr7 (16-319)||(48577399-48577701)
chr7 (16-297)||(32955187-32955467)
[»] chr3 (2 HSPs)
chr3 (16-319)||(5912954-5913255)
chr3 (243-319)||(33294399-33294474)
[»] chr1 (3 HSPs)
chr1 (16-319)||(50672054-50672355)
chr1 (16-319)||(10463237-10463540)
chr1 (16-319)||(43732891-43733194)
[»] chr8 (2 HSPs)
chr8 (16-319)||(25864031-25864334)
chr8 (128-196)||(32327384-32327452)
[»] scaffold0755 (1 HSPs)
scaffold0755 (128-196)||(4716-4784)
[»] chr4 (1 HSPs)
chr4 (267-319)||(53953349-53953401)
[»] chr6 (1 HSPs)
chr6 (267-319)||(5723426-5723478)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 48577399 - 48577701
Alignment:
Q  16 cacattgagatccaaattacataagagagacttaatctaatatacatgtaatcaaaatctgacttgattgaatacacataacaagatctaagccttcttt 115  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48577399 cacattgagatccaaattacatgatagagacttaatctaatatacatgtaatcaaaatctgacttaattgaatacacataacaagatctaagccttcttt 48577498  T
Q  116 agagactttccttcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaacctccctgcaacccttgacacaccaaaaatcatct 215  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  48577499 agagactttccttcccaataacagctgtccaatcttcttgttcaaaatccttcaaacagatccaaccttcctgcaaccattgacacaccaaaaatcatct 48577598  T
Q  216 tgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatactgagattgagaaggagggatgtcaatagccggcggcctgtgataaattg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48577599 tgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatac-gagattgagaaggagggatgtgaatagccggcggcctgtgataaattg 48577697  T
Q  316 atgt 319  Q
    ||||    
T  48577698 atgt 48577701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 32955187 - 32955467
Alignment:
Q  16 cacattgagatccaaattacataagagagacttaatctaatatacatgtaatcaaaatctgacttgattgaatacacataacaagatctaagccttcttt 115  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32955187 cacattgagatccaaattacatgagagagacttaatctaatatacatgtaatcaaaatctgacttgattgaatacacataacaagatctaagccttcttt 32955286  T
Q  116 agagactttccttcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaacctccctgcaacccttgacacaccaaaaatcatct 215  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32955287 agagactttccttcccaatagcagctgtccagttttcttgttcaaaatctttcaaacagatccaacctccctgcaacccttgacacaccaaaaatcatct 32955386  T
Q  216 tgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatactgagattgagaaggagggatgtcaatagccg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32955387 tgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatac-gagattgagaaggagggatgtcaatagccg 32955467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 5912954 - 5913255
Alignment:
Q  16 cacattgagatccaaattacataagagagacttaatctaatatacatgtaatcaaaatctgacttgattgaatacacataacaagatctaagccttcttt 115  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||||| ||||  ||| || ||||||||||||||||||||||||||||||||||    
T  5912954 cacattgagatccaaattacatgacagcgacttaatctaatatacatgtaataaaaaa-tgaattaattgaatacacataacaagatctaagccttcttt 5913052  T
Q  116 agagactttccttcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaacctccctgcaacccttgacacaccaaaaatcatct 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5913053 agagactttccttcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatct 5913152  T
Q  216 tgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatactgagattgagaaggagggatgtcaatagccggcggcctgtgataaattg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  5913153 tgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatac-gagaatgagaaggagggatgtgaatagccggcggcctgtgataaattg 5913251  T
Q  316 atgt 319  Q
    ||||    
T  5913252 atgt 5913255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 33294399 - 33294474
Alignment:
Q  243 aacaacatggattcaatcgaatactgagattgagaaggagggatgtcaatagccggcggcctgtgataaattgatgt 319  Q
    ||||||| |||||| || ||||| |||||||||||| || |||||| |||  |||||||||||||| | ||||||||    
T  33294399 aacaacaaggattccattgaata-tgagattgagaaagatggatgtgaatctccggcggcctgtgacagattgatgt 33294474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 50672355 - 50672054
Alignment:
Q  16 cacattgagatccaaattacataagagagacttaatctaatatacatgtaatcaaaatctgacttgattgaatacacataacaagatctaagccttcttt 115  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||||||    
T  50672355 cacattgagatccaaattacatgacagagacttaatctaatatacatgtaatcaaaaa-tgaattaattgaatacacataacaagatctaagccttcttt 50672257  T
Q  116 agagactttccttcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaacctccctgcaacccttgacacaccaaaaatcatct 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  50672256 agagactttccttcccaatagcagttgtccagtcttcttgttcaaaatccttcaaacagatccaaccttcctgcaatccttgacacaccaaaaatcatct 50672157  T
Q  216 tgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatactgagattgagaaggagggatgtcaatagccggcggcctgtgataaattg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||||    
T  50672156 tgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatac-gagattgagaaggagggatgtgaataaccgacggcctgtgataaattg 50672058  T
Q  316 atgt 319  Q
    ||||    
T  50672057 atgt 50672054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 10463540 - 10463237
Alignment:
Q  16 cacattgagatccaaattacataagagagacttaatctaatatacatgtaatcaaaatctgacttgattgaatacacataacaagatctaagccttcttt 115  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||||||    
T  10463540 cacattgagatccaaattacatgacagagacttaatctaatatacatgtaatcaaaaa-tgaattaattgaatacacataacaagatctaagccttcttt 10463442  T
Q  116 agagactttccttcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaacctccctgcaacccttgacacaccaaaaatcatct 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10463441 agagactttccatcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatct 10463342  T
Q  216 tgataagccaaaaatcttattcaccaaaacaac--atggattcaatcgaatactgagattgagaaggagggatgtcaatagccggcggcctgtgataaat 313  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||| |||| ||| || ||||||||||||    
T  10463341 tgataagccaaaaatcttattcaccaaaacaacatatggattcaatcgaatac-gagattgagaaggagggatgtgaataaccgacgacctgtgataaat 10463243  T
Q  314 tgatgt 319  Q
    ||||||    
T  10463242 tgatgt 10463237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 43733194 - 43732891
Alignment:
Q  16 cacattgagatccaaattacataagagagacttaatctaatatacatgtaatcaaaatctgacttgattgaatacacataacaagatctaagccttcttt 115  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||||||    
T  43733194 cacattgagatccaaattacatgacagagacttaatctaatatacatgtaatcaaaaa-tgaattaattgaatacacataacaagatctaagccttcttt 43733096  T
Q  116 agagactttccttcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaacctccctgcaacccttgacacaccaaaaatcatct 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43733095 agagactttccatcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatct 43732996  T
Q  216 tgataagccaaaaatcttattcaccaaaacaac--atggattcaatcgaatactgagattgagaaggagggatgtcaatagccggcggcctgtgataaat 313  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||| |||| ||| || ||||||||||||    
T  43732995 tgataagccaaaaatcttattcaccaaaacaacatatggattcaatcgaatac-gagattgagaaggagggatgtgaataaccgacgacctgtgataaat 43732897  T
Q  314 tgatgt 319  Q
    ||||||    
T  43732896 tgatgt 43732891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 25864031 - 25864334
Alignment:
Q  16 cacattgagatccaaattacataagagagacttaatctaatatacatgtaatcaaaatctgacttgattgaatacacataacaagatctaagccttcttt 115  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||||||    
T  25864031 cacattgagatccaaattacatgacagagacttaatctaatatacatgtaatcaaaaa-tgaattaattgaatacacataacaagatctaagccttcttt 25864129  T
Q  116 agagactttccttcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaacctccctgcaacccttgacacaccaaaaatcatct 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  25864130 agagactttccttcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcgtct 25864229  T
Q  216 tgataagccaaaaatcttattcaccaaaacaac--atggattcaatcgaatactgagattgagaaggagggatgtcaatagccggcggcctgtgataaat 313  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||    
T  25864230 tgataagccaaaaatcttattcaccaaaacaacatatggattcaatcgaatac-gagattgagaaggagggatgtgaataaccgacggcctgtgataaat 25864328  T
Q  314 tgatgt 319  Q
    ||||||    
T  25864329 tgatgt 25864334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 32327452 - 32327384
Alignment:
Q  128 tcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaacctccctgcaaccctt 196  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  32327452 tcccagtagcagctgtccagtcttcttgttcaaaacccttcaaacagatccaaccctcctgcaaccctt 32327384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 4784 - 4716
Alignment:
Q  128 tcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaacctccctgcaaccctt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  4784 tcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaaccctcctgcaaccctt 4716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 53953349 - 53953401
Alignment:
Q  267 tgagattgagaaggagggatgtcaatagccggcggcctgtgataaattgatgt 319  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  53953349 tgagattgagaaggagggatgtgaatcgccggcggcctgtgatagattgatgt 53953401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 5723478 - 5723426
Alignment:
Q  267 tgagattgagaaggagggatgtcaatagccggcggcctgtgataaattgatgt 319  Q
    ||||||||||||||| |||||| |||  |||||||||||||| | ||||||||    
T  5723478 tgagattgagaaggatggatgtgaatctccggcggcctgtgacagattgatgt 5723426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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