View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_high_20 (Length: 323)
Name: NF10151_high_20
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 72 - 312
Target Start/End: Original strand, 19095164 - 19095404
Alignment:
| Q |
72 |
aagatttaaaactatctcctaaatgatgctaaaacaactatatgacaaactattatctaatctccatagttgaactttttccttgtctttaagcaacgaa |
171 |
Q |
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| T |
19095164 |
aagatttaaaactatctcctaaatgaagctaaaacaactatatgacaaactatcatctaagctccatagttgaaatttttccttgtctttaagcaacgaa |
19095263 |
T |
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| Q |
172 |
cttgtaaaatagaattctacaacaaaataacaagtctcactgaaatataagaacaataaaaattctttacctgatctggtaatggatcatcgacatttga |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
19095264 |
cttgtaaaatagaattctacaacaaaataacaagtctcactgaaatataagaacaataaaaattctttacctgatctggtaatggaccaccgacatttga |
19095363 |
T |
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| Q |
272 |
tgcattcttttacttaaagactctgattctccagacttcat |
312 |
Q |
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| T |
19095364 |
tgcattcttttacttaaagactctgattctccagacttcat |
19095404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19095087 - 19095131
Alignment:
| Q |
1 |
tcttgtcccttgcgtgtccattggtttatttacaaatactcaacc |
45 |
Q |
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| T |
19095087 |
tcttgtcccttgcgtgtccattggtttatttacaaatactcaacc |
19095131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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